View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_330 (Length: 230)
Name: NF8810A_low_330
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_330 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 25633267 - 25633496
Alignment:
| Q |
1 |
gattgaatgcagaatctgcaatcagaaacaaaggatcgtgaagaaatcgatccaagaagatgaacaaggaagaatgcacaacagaaaacggttagaacaa |
100 |
Q |
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| T |
25633267 |
gattgaatgcagaatctgcaatcagaaacaaaggatcgtgaagaaatcgatccaagaagatgaacaacgaagaatgcacaacaaaaaacggttagaacaa |
25633366 |
T |
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| Q |
101 |
tattaggaaaccagaaaaatgtatggaaaagtattattctcattaatgaa--gtatctgttacagcaagtatatatagacatatgtttgtgtacattaat |
198 |
Q |
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| T |
25633367 |
tattaggaaaccagaaaaatgaatggagaagtattattctcattgatgaagtgtatctgttacagcaagtatatatagacatatgtttgtgtacattaat |
25633466 |
T |
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| Q |
199 |
taagctatcatatgctatagtgtagctaag |
228 |
Q |
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| T |
25633467 |
taagctatcatatactatagtgtagctaag |
25633496 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 11922225 - 11922145
Alignment:
| Q |
8 |
tgcagaatctgcaatcagaaacaaaggatcgtgaagaaatcgatccaagaagatgaacaaggaagaatgcacaacagaaaa |
88 |
Q |
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||||||||||||||||| | ||||| ||| |||||||| ||||| |||||||||| ||| || |||||| | ||||||| |
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| T |
11922225 |
tgcagaatctgcaatcaaatgcaaagaatcttgaagaaaacgatcgaagaagatgatcaaagagaaatgcatagcagaaaa |
11922145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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