View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_332 (Length: 230)
Name: NF8810A_low_332
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_332 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 3 - 225
Target Start/End: Original strand, 6315377 - 6315599
Alignment:
| Q |
3 |
ggctttatggagggttatggagtgagcaaatagtacggggacaattgtgactgactgcaaattggttgttaatacaatggctcatagtttttggctataa |
102 |
Q |
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| T |
6315377 |
ggctttatggagggttatggagtgagcaaatagtacggggacaattgtgactgactgcaaattggttgttaatacaatggctcatagtttttggctataa |
6315476 |
T |
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| Q |
103 |
ctgagtttagatccatgatttcaaaatggagaggccgtattaatgtaaaaccaaacttaagggttaattttataaggatgcaagccaatcaagttgctca |
202 |
Q |
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| T |
6315477 |
ctgagtttagatccatgatttcaaaatggagaggccgtattaatgtaaaaccaaacttaagggttaattttataaggatgcaagccaatcaagttgctca |
6315576 |
T |
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| Q |
203 |
tccgttagcaaaagtatctcatt |
225 |
Q |
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| T |
6315577 |
tccgttagcaaaagtatctcatt |
6315599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 55322830 - 55322887
Alignment:
| Q |
164 |
ggttaattttataaggatgcaagccaatcaagttgctcatccgttagcaaaagtatct |
221 |
Q |
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| T |
55322830 |
ggttaattttataaggagacaagtcaaacaagttgctcattcattagaaaaagtatct |
55322887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 26352137 - 26352201
Alignment:
| Q |
113 |
atccatgatttcaaaatggagaggccgtattaatgtaaaaccaaacttaagggttaattttataa |
177 |
Q |
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| T |
26352137 |
atccatgattttaaaatgtagagactatattaatgtaaaacccagctggagggttaattttataa |
26352201 |
T |
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