View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_34 (Length: 412)

Name: NF8810A_low_34
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_34
NF8810A_low_34
[»] chr6 (3 HSPs)
chr6 (149-384)||(35091745-35091980)
chr6 (7-129)||(35090016-35090137)
chr6 (128-256)||(19228492-19228620)
[»] chr2 (4 HSPs)
chr2 (274-385)||(9259579-9259689)
chr2 (276-382)||(17139937-17140043)
chr2 (282-364)||(31392295-31392377)
chr2 (157-256)||(39809469-39809568)
[»] chr3 (4 HSPs)
chr3 (274-382)||(1580996-1581105)
chr3 (274-382)||(41404207-41404316)
chr3 (274-319)||(3663805-3663850)
chr3 (152-256)||(41403985-41404089)
[»] chr1 (3 HSPs)
chr1 (274-364)||(3290493-3290583)
chr1 (282-382)||(32984385-32984486)
chr1 (113-256)||(32984613-32984756)
[»] chr7 (6 HSPs)
chr7 (274-382)||(30464521-30464630)
chr7 (117-256)||(30464263-30464402)
chr7 (288-382)||(8160939-8161032)
chr7 (274-382)||(39827621-39827730)
chr7 (122-254)||(8160678-8160810)
chr7 (150-256)||(39827396-39827502)
[»] chr5 (1 HSPs)
chr5 (117-212)||(12892984-12893079)
[»] chr8 (1 HSPs)
chr8 (274-320)||(12735469-12735515)


Alignment Details
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 149 - 384
Target Start/End: Original strand, 35091745 - 35091980
Alignment:
Q  149 gagaaaagagaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaacaccaaagatttaagtctaattggacactactcataca 248  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| |||||||||||| ||||| ||||||||||||||||||||||    
T  35091745 gagaaaagagaaaactaaacatagatgattttaggagttgttatctcgataacatcagctaacaccaaagaattaagcctaattggacactactcataca 35091844  T
Q  249 catgcaactcagtgannnnnnngattgagacgtcaaccaacaacacttccatccttagttgtctgcagggtacacaccaccacactcgaatcgacttgca 348  Q
    || ||||||||||||       |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  35091845 cacgcaactcagtgatttttttgattgagacgtcaaccaacaacacttccatccttagttgtgtgcagggtacacaccaccacactcgaatcgacgtgca 35091944  T
Q  349 actcatccttcgcaaacccctctctctagcaattcg 384  Q
    ||||| ||||||||||||||||||||||||||||||    
T  35091945 actcaaccttcgcaaacccctctctctagcaattcg 35091980  T

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Target: chr6; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 35090016 - 35090137
Alignment:
Q  7 atgagtacatagtacatttactttcttttaagcagacatgaaattacctttatttacgtttgatatatatcttcatacttttggtattgttaatcagtgc 106  Q
    ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35090016 atgagtacacagtacatttactttcttttaagca-acatgaaattacctttatttacgtttgatatatatcttcatacttttggtattgttaatcagtgc 35090114  T
Q  107 tttaagatatttttattttggga 129  Q
    |||||||||||||||||||||||    
T  35090115 tttaagatatttttattttggga 35090137  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 19228620 - 19228492
Alignment:
Q  128 gaaacaaagagacctaagtatgagaaaagagaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaacaccaaagatttaagtc 227  Q
    ||||||||||| ||||||   |||||||||||||| |||||| |||||| | |||||||  ||||  | |||||||||| |||||||| |||  |||| |    
T  19228620 gaaacaaagaggcctaagctcgagaaaagagaaaattaaacagagatgaatctaggggtcattattcccataacatcagctaacaccagagaactaagcc 19228521  T
Q  228 taattggacactactcatacacatgcaac 256  Q
    || ||||||| | |||||||||| |||||    
T  19228520 tagttggacattgctcatacacacgcaac 19228492  T

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Target: chr2 (Bit Score: 64; Significance: 7e-28; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 274 - 385
Target Start/End: Original strand, 9259579 - 9259689
Alignment:
Q  274 tgagacgtcaaccaacaacacttccatccttagttgtctgcagggtacacaccaccacactcgaatcgacttgcaactcatccttcgcaaacccctctct 373  Q
    ||||||| ||||||||||||||||||||||||||||||| ||| || | |||||||||||||||||| || || |||||| ||||||||||  |||||||    
T  9259579 tgagacgccaaccaacaacacttccatccttagttgtctacagagtcctcaccaccacactcgaatcaacgtgtaactcaaccttcgcaaa-acctctct 9259677  T
Q  374 ctagcaattcgg 385  Q
    ||||||||||||    
T  9259678 ctagcaattcgg 9259689  T

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Target: chr2; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 276 - 382
Target Start/End: Original strand, 17139937 - 17140043
Alignment:
Q  276 agacgtcaaccaacaacacttccatccttagttgtctgcagggtacacaccaccacactcgaatcgacttgcaactcatccttcg-caaacccctctctc 374  Q
    ||||| ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| || || |||||| ||||||  ||||| |||||||    
T  17139937 agacgccaaccaa-aacacttccatccttagttgtctgcagagtccacaccaccacactcgaatcaacatgtaactcaaccttcgaaaaacctctctctc 17140035  T
Q  375 tagcaatt 382  Q
    ||||||||    
T  17140036 tagcaatt 17140043  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 282 - 364
Target Start/End: Complemental strand, 31392377 - 31392295
Alignment:
Q  282 caaccaacaacacttccatccttagttgtctgcagggtacacaccaccacactcgaatcgacttgcaactcatccttcgcaaa 364  Q
    |||||||||| |||||||||||||||| |||||||||| | |||||| ||||| |||||  | ||||||||| |||| |||||    
T  31392377 caaccaacaatacttccatccttagttatctgcagggtccgcaccactacacttgaatcagcgtgcaactcaacctttgcaaa 31392295  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 157 - 256
Target Start/End: Complemental strand, 39809568 - 39809469
Alignment:
Q  157 agaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaacaccaaagatttaagtctaattggacactactcatacacatgcaac 256  Q
    ||||||||||||| |||||| | ||||||| | |||| | ||||||| ||||||||||  | |  |||| |||| | ||||||||||||||||| |||||    
T  39809568 agaaaactaaacagagatgactctaggggtcgctatccccataacattagttaacaccggataactaagcctaactagacactactcatacacacgcaac 39809469  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 274 - 382
Target Start/End: Complemental strand, 1581105 - 1580996
Alignment:
Q  274 tgagacgtcaaccaacaacacttccatccttagttgtctgcagggtacacaccaccacactcgaatcgacttgcaactcatccttcgc-aaacccctctc 372  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||  |||||||||||| ||||| || ||||||||| |||| || ||||| |||||    
T  1581105 tgagacgccaaccaacaacacttccatccttagttgtctgtagggtatgcaccaccacacttgaatcaacgtgcaactcaacctttgcaaaacctctctc 1581006  T
Q  373 tctagcaatt 382  Q
    ||||||||||    
T  1581005 tctagcaatt 1580996  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 274 - 382
Target Start/End: Original strand, 41404207 - 41404316
Alignment:
Q  274 tgagacgtcaaccaacaacacttccatccttagttgtctgcagggtacacaccaccacactcgaatcgacttgcaactcatccttcgc-aaacccctctc 372  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||  ||||||||||||| |||| || ||||||||| ||||||| ||||| |||||    
T  41404207 tgagacgccaaccaacaacacttccatcctaagttgtttgcagggtatgcaccaccacactcaaatcaacatgcaactcaaccttcgcaaaacctctctc 41404306  T
Q  373 tctagcaatt 382  Q
    |||| |||||    
T  41404307 tctaacaatt 41404316  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 274 - 319
Target Start/End: Original strand, 3663805 - 3663850
Alignment:
Q  274 tgagacgtcaaccaacaacacttccatccttagttgtctgcagggt 319  Q
    ||||||| |||||||||||||||||||| |||||||| ||||||||    
T  3663805 tgagacgccaaccaacaacacttccatctttagttgtttgcagggt 3663850  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 256
Target Start/End: Original strand, 41403985 - 41404089
Alignment:
Q  152 aaaagagaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaacaccaaagatttaagtctaattggacactactcatacacat 251  Q
    |||||||||||||| ||| ||| || | |||| || | ||||   ||||||| || |||||||| |||  ||||||||  ||||||||| ||||||||||    
T  41403985 aaaagagaaaactagacagagacgactctaggagtcgctatccacataacataagctaacaccagagaactaagtctagctggacactagtcatacacat 41404084  T
Q  252 gcaac 256  Q
    |||||    
T  41404085 gcaac 41404089  T

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Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 274 - 364
Target Start/End: Complemental strand, 3290583 - 3290493
Alignment:
Q  274 tgagacgtcaaccaacaacacttccatccttagttgtctgcagggtacacaccaccacactcgaatcgacttgcaactcatccttcgcaaa 364  Q
    ||||||| |||||||||||||||||||||||  ||||||||||||||| ||| |||||||||||||| || ||||||||| ||||||||||    
T  3290583 tgagacgccaaccaacaacacttccatccttgattgtctgcagggtacgcacaaccacactcgaatcaacgtgcaactcaaccttcgcaaa 3290493  T

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Target: chr1; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 282 - 382
Target Start/End: Complemental strand, 32984486 - 32984385
Alignment:
Q  282 caaccaacaacacttccatccttagttgtctgcagggtacacaccaccacactcgaatcgacttgcaactcatccttcgc-aaacccctctctctagcaa 380  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||| || ||||||||| |||| || ||||| |||| ||||||||    
T  32984486 caaccaacaacacttccatccttagttgtctgcagggtatgcaccaccacacttgaatcaacgtgcaactcaacctttgcaaaacctctctgtctagcaa 32984387  T
Q  381 tt 382  Q
    ||    
T  32984386 tt 32984385  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 256
Target Start/End: Complemental strand, 32984756 - 32984613
Alignment:
Q  113 atatttttattttgggaaacaaagagacctaagtatgagaaaagagaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaaca 212  Q
    ||||||||  |||||||||||||| | | ||||   || ||||||||||| |||||| |||||| | ||||||||| |||| | |||||||||  |||||    
T  32984756 atattttttgtttgggaaacaaaggggcttaagcccgaaaaaagagaaaattaaacagagatgactctaggggttgctatccccataacatcaactaaca 32984657  T
Q  213 ccaaagatttaagtctaattggacactactcatacacatgcaac 256  Q
    ||| |||  |||| |||  |||||| | |||||||||| |||||    
T  32984656 ccagagaactaagcctagctggacattgctcatacacacgcaac 32984613  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 274 - 382
Target Start/End: Original strand, 30464521 - 30464630
Alignment:
Q  274 tgagacgtcaaccaacaacacttccatccttagttgtctgcagggtacacaccaccacactcgaatcgacttgcaactcatccttcgc-aaacccctctc 372  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||  |||||||||||| ||||  || ||||||||| | || || ||||| |||||    
T  30464521 tgagacgccaaccaacaacacttccattcttagttgtctgcagggtatgcaccaccacacttgaattaacgtgcaactcaacttttgcaaaacctctctc 30464620  T
Q  373 tctagcaatt 382  Q
    ||||||||||    
T  30464621 tctagcaatt 30464630  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 117 - 256
Target Start/End: Original strand, 30464263 - 30464402
Alignment:
Q  117 ttttattttgggaaacaaagagacctaagtatgagaaaagagaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaacaccaa 216  Q
    |||| ||||| ||||||||| | ||||||   ||||||||||||||  ||||| |||||| ||||||||| | |||| | |||||||||| ||||||||     
T  30464263 tttttttttgagaaacaaaggggcctaagctcgagaaaagagaaaatcaaacaaagatgactttaggggtcgctatccccataacatcagctaacaccag 30464362  T
Q  217 agatttaagtctaattggacactactcatacacatgcaac 256  Q
    |||  |||| |||  ||||||||||||||||||| |||||    
T  30464363 agaaataagcctagctggacactactcatacacacgcaac 30464402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 288 - 382
Target Start/End: Original strand, 8160939 - 8161032
Alignment:
Q  288 acaacacttccatccttagttgtctgcagggtacacaccaccacactcgaatcgacttgcaactcatccttcgcaaacccctctctctagcaatt 382  Q
    |||||||||| ||||||||||||||||||||||  |||||||||||| ||||| |||||||||||| | || |||||  ||||||||||| ||||    
T  8160939 acaacacttctatccttagttgtctgcagggtatgcaccaccacacttgaatcaacttgcaactcaacttttgcaaa-acctctctctagaaatt 8161032  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 274 - 382
Target Start/End: Original strand, 39827621 - 39827730
Alignment:
Q  274 tgagacgtcaaccaacaacacttccatccttagttgtctgcagggtacacaccaccacactcgaatcgacttgcaactcatccttcgc-aaacccctctc 372  Q
    ||||||| |||||| |||||| ||||||||||||||| |||| | ||  |||||||||||||||||| || || |||||| | || || ||||| |||||    
T  39827621 tgagacgccaaccagcaacacctccatccttagttgtttgcaagctatgcaccaccacactcgaatcaacgtgaaactcaacttttgctaaacctctctc 39827720  T
Q  373 tctagcaatt 382  Q
    ||||||||||    
T  39827721 tctagcaatt 39827730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 122 - 254
Target Start/End: Original strand, 8160678 - 8160810
Alignment:
Q  122 ttttgggaaacaaagagacctaagtatgagaaaagagaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaacaccaaagatt 221  Q
    ||||||||||||||| | |||||| | ||||||||||||||||||| | |||||| | |||||||   |||| | |||||||||| |||||||| |||      
T  8160678 ttttgggaaacaaaggggcctaagcacgagaaaagagaaaactaaatagagatgactctaggggtcactatccccataacatcagctaacaccagagaac 8160777  T
Q  222 taagtctaattggacactactcatacacatgca 254  Q
    ||||  ||  |||||||| |||| |||||||||    
T  8160778 taagcttagctggacactgctcagacacatgca 8160810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 256
Target Start/End: Original strand, 39827396 - 39827502
Alignment:
Q  150 agaaaagagaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaacaccaaagatttaagtctaattggacactactcatacac 249  Q
    |||||| ||||||||||||| |||||| | ||||||| | |||| | |||||||||  ||||| || | |  |||||||| || |||||| |||||||||    
T  39827396 agaaaaaagaaaactaaacagagatgactctaggggtcgctatccctataacatcaactaacatcagataactaagtctagtttgacactgctcatacac 39827495  T
Q  250 atgcaac 256  Q
    | |||||    
T  39827496 acgcaac 39827502  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 12892984 - 12893079
Alignment:
Q  117 ttttattttgggaaacaaagagacctaagtatgagaaaagagaaaactaaacatagatgattttaggggttgttatctcaataacatcagttaaca 212  Q
    |||| |||| |||||||||| ||||||||  ||||||| |||||||||||| | ||| || ||||| ||| |||||| | |||||||||| |||||    
T  12892984 ttttttttttggaaacaaagggacctaagcttgagaaaggagaaaactaaatagagacgactttagaggtcgttatccccataacatcagctaaca 12893079  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 274 - 320
Target Start/End: Original strand, 12735469 - 12735515
Alignment:
Q  274 tgagacgtcaaccaacaacacttccatccttagttgtctgcagggta 320  Q
    ||||||||||||||||||||||| |||| |||||||| || ||||||    
T  12735469 tgagacgtcaaccaacaacactttcatctttagttgtttgtagggta 12735515  T

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