View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_340 (Length: 230)
Name: NF8810A_low_340
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_340 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 16673335 - 16673106
Alignment:
| Q |
1 |
gaatacacattaggataaaccctaaagtctcatcatttctctatcgacctttggtctgctaagttcattctagagatggtgggctctagagttttgcaag |
100 |
Q |
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| T |
16673335 |
gaatacacattaggataaaccctaaagtctcatcctttctctatcgacctttggtctgctaagttcattctagagatggtgggttctagagttttgcaag |
16673236 |
T |
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| Q |
101 |
gagaatcattggaagcattcaatgaaggggttggttatattttaaatcgttggccggctcttcgaagcgctgttgattaccaacaaggtggggaaaactc |
200 |
Q |
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| T |
16673235 |
gagaatcattggaagcattcaatgaaggggttggttatattttgaatcgttggccgcctcttcgaagcgctgttgattaccaacaaggtggcgaaaactc |
16673136 |
T |
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| Q |
201 |
tcacctcaaagctgaaaaactcattggtga |
230 |
Q |
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| T |
16673135 |
tcacctcaaagctgaaaaactcattggtga |
16673106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 15626279 - 15626402
Alignment:
| Q |
102 |
agaatcattggaagcattcaatgaaggggttggttatattttaaatcgttggccggctcttcgaagcgctgttgattaccaacaaggtggggaaaactct |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
15626279 |
agaatcattggaagcattcaatgaaggggttggttatattttgaataattggttggctcttcgaggcgctgttgattaccaacaaggtggcaaaaactct |
15626378 |
T |
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| Q |
202 |
cacctcaaagctgaaaaactcatt |
225 |
Q |
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| T |
15626379 |
cacctcaaagctaaaaaactcatt |
15626402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 102 - 225
Target Start/End: Original strand, 15650036 - 15650159
Alignment:
| Q |
102 |
agaatcattggaagcattcaatgaaggggttggttatattttaaatcgttggccggctcttcgaagcgctgttgattaccaacaaggtggggaaaactct |
201 |
Q |
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| T |
15650036 |
agaatcattagaaacattcaatgaaggggttggttatattttgaataattggttggctctttgaggcactgttgattaccaacaaggtggcaaaaactct |
15650135 |
T |
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| Q |
202 |
cacctcaaagctgaaaaactcatt |
225 |
Q |
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| T |
15650136 |
cacctcaaagctaaaaaactcatt |
15650159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 213
Target Start/End: Complemental strand, 16666374 - 16666248
Alignment:
| Q |
87 |
tagagttttgcaaggagaatcattggaagcattcaatgaaggggttggttatattttaaatcgttggccggctcttcgaagcgctgttgattaccaacaa |
186 |
Q |
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| T |
16666374 |
tagagttttgcaaggagaatcattgaaagcattcaatgaagggattgattatgttttcaatcattgggatgctcttcaaaactctatttattaccatcgg |
16666275 |
T |
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| Q |
187 |
ggtggggaaaactctcacctcaaagct |
213 |
Q |
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||||| || |||||||||||||||||| |
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| T |
16666274 |
ggtggcgataactctcacctcaaagct |
16666248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 15607307 - 15607358
Alignment:
| Q |
175 |
gattaccaacaaggtggggaaaactctcacctcaaagctgaaaaactcattg |
226 |
Q |
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| T |
15607307 |
gattaccaacaaggtggcaaaaactctcacctcaaagctaaaaaactcattg |
15607358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 15615652 - 15615703
Alignment:
| Q |
175 |
gattaccaacaaggtggggaaaactctcacctcaaagctgaaaaactcattg |
226 |
Q |
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| T |
15615652 |
gattaccaacaaggtggcaaaaactctcacctcaaagctaaaaaactcattg |
15615703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 175 - 226
Target Start/End: Original strand, 15638827 - 15638878
Alignment:
| Q |
175 |
gattaccaacaaggtggggaaaactctcacctcaaagctgaaaaactcattg |
226 |
Q |
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||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
15638827 |
gattaccaacaaggtggcaaaaactctcacctcaaagctaaaaaactcattg |
15638878 |
T |
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