View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_346 (Length: 229)
Name: NF8810A_low_346
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_346 |
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Alignment Details
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 31 - 223
Target Start/End: Original strand, 31636336 - 31636531
Alignment:
| Q |
31 |
ctctgttttttccccagaatggatacttgaggtttgtgacactgtc---tccacagtcaaaagcttcgttgcagtctgtgtaatcatcgcacatacacgt |
127 |
Q |
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| T |
31636336 |
ctctgttatttccccagaatggatacttgaggtttgtgatgctgctacttccgcattcaaaagcttcgttgcagtctgtgtaatcattgcacatacacgt |
31636435 |
T |
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| Q |
128 |
tggaatattgatgatgaagatcattaaaagtatcacggagaaaaagagaaaagaagatggatgaagaagaggtttcattcttgcagccgaagaaag |
223 |
Q |
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| T |
31636436 |
tggaatattgatgatgaagatcatcaaaagcatcacggagaaaaagagaaaagaagatggatgaagaagaggtttcattcttgcagccgaagaaag |
31636531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 31 - 156
Target Start/End: Original strand, 31621341 - 31621469
Alignment:
| Q |
31 |
ctctgttttttccccagaatggatacttgaggtttgtgacactgtc---tccacagtcaaaagcttcgttgcagtctgtgtaatcatcgcacatacacgt |
127 |
Q |
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| T |
31621341 |
ctctgttatttccccagaatggatacttgaggtttgtgatgctgctacttccgcattcaaaagcttcgttgcagtctgtgtaatcattgcacatacacgt |
31621440 |
T |
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| Q |
128 |
tggaatattgatgatgaagatcattaaaa |
156 |
Q |
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| T |
31621441 |
tggaatattgatgatgaagatcatcaaaa |
31621469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 31616686 - 31616718
Alignment:
| Q |
110 |
atcatcgcacatacacgttggaatattgatgat |
142 |
Q |
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| T |
31616686 |
atcatcacacatacacgttggaatattgatgat |
31616718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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