View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_348 (Length: 229)
Name: NF8810A_low_348
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_348 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 21434773 - 21434545
Alignment:
| Q |
1 |
agaaattgaggagcaaccctttagatttttgcttgttattgtctcttatctcaaaaatttccctttcacgttacttgatcatcttcattttgattcatca |
100 |
Q |
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| T |
21434773 |
agaaattgaggagcaaccctttagatttttgcttgttattgtctcttatctcaaaaatttccctttcacgttacttgatcatcttcattttgattcatca |
21434674 |
T |
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| Q |
101 |
aagggggtagcacttgggtattgttcagacaacagttttcaacataaaaaatatccctaatctataggatttttatttcccaaggttttcatgttaggac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21434673 |
aagggggtagcacttgggtattgttcagacaacagttttcaacataaaaaatatccctaatctatatgatttttatttcccaaggttttcatgttaggac |
21434574 |
T |
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| Q |
201 |
ttgaaaccaattatcttttctgatattga |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
21434573 |
ttgaaaccaattatcttttctgatattga |
21434545 |
T |
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