View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_35 (Length: 412)
Name: NF8810A_low_35
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_35 |
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| [»] chr4 (4 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 80 - 412
Target Start/End: Original strand, 31251816 - 31252148
Alignment:
| Q |
80 |
taacattaaaactgttattttacatactaagtcatnnnnnnnnnnnnnncaatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaactcta |
179 |
Q |
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| T |
31251816 |
taacattaaacctgttattttacatactaagtcataaaaaggaaaaaaacaatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaattcta |
31251915 |
T |
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| Q |
180 |
gatgtcattcataaacaaaagtggtgatttattaggggtagcattccaaaactgcataaaacttctgggcttgtttgatatgatttcacctaactttatc |
279 |
Q |
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| T |
31251916 |
gatgtcattcatacacaaaagtggtgatttattaggggtagcattccaaaactgcataaaacttctgagcttgtttgatatgatttcacctaactttatc |
31252015 |
T |
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| Q |
280 |
atctaatggagtgattttatacatggtaatgaaatgagataagaatcaattagatgttaattaatcatatagtcaaaaggaatttgtgatgagaattatc |
379 |
Q |
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| T |
31252016 |
atctaatggagtgattttatacatggtaatgaaatgagataagaatcaattagatgttaataaatcatagaatcaaaaggaatttgtgatgagaattatc |
31252115 |
T |
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| Q |
380 |
agggccaacattaatttgtgatgcaggagagat |
412 |
Q |
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| T |
31252116 |
agggccaacattaatttgtgatgcaggagagat |
31252148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 129 - 412
Target Start/End: Complemental strand, 25815278 - 25814996
Alignment:
| Q |
129 |
caatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaactctagatgtcattcataaacaaaagtggtgatttattaggggtagcattccaa |
228 |
Q |
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| T |
25815278 |
caatcaaatgatgtgtttcttttctcgtcattgtttctgtttggaactctagatgtcattcatacacaaaagtggtgatttattaggggtagcattccaa |
25815179 |
T |
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| Q |
229 |
aactgcataaaacttctgggcttgtttgatatgatttcacctaactttatcatctaatggagtgattttatacatggtaatgaaatgagataagaatcaa |
328 |
Q |
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| T |
25815178 |
aactgcataaaacttctgagcttgtttgatatgatttcacctaactttatcatctaatggggtcattttatacatggtaatgaaatgagataagaatcaa |
25815079 |
T |
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| Q |
329 |
ttagatgttaattaatcatatagtcaaaaggaatttgtgatgagaattatcagggccaacattaatttgtgatgcaggagagat |
412 |
Q |
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| T |
25815078 |
-tagatgttaattaatcataaaatcaaaaggaatttgtgatgagaattattagggccaacattaatttgtaatgcaagagagat |
25814996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Complemental strand, 25815401 - 25815373
Alignment:
| Q |
12 |
aagaaacgggagatttcatattaaataat |
40 |
Q |
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| T |
25815401 |
aagaaacgggagatttcatattaaataat |
25815373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 31251748 - 31251776
Alignment:
| Q |
12 |
aagaaacgggagatttcatattaaataat |
40 |
Q |
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| T |
31251748 |
aagaaacgggagatttcatattaaataat |
31251776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 274 - 412
Target Start/End: Complemental strand, 23052912 - 23052774
Alignment:
| Q |
274 |
tttatcatctaatggagtgattttatacatggtaatgaaatgagataagaatcaattagatgttaattaatcatatagtcaaaaggaatttgtgatgaga |
373 |
Q |
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| T |
23052912 |
tttatcatctaatgaggtgattttatacatggtgatggaatgagatgagaatcaattagatgttaattaatcataaaatcaaaataaatttgttatgaga |
23052813 |
T |
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| Q |
374 |
attatcagggccaacattaatttgtgatgcaggagagat |
412 |
Q |
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| T |
23052812 |
tttatcagaaccaacattaatatgtgatgcaggagagat |
23052774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 23052956 - 23052912
Alignment:
| Q |
198 |
aagtggtgatttattaggggtagcattccaaaactgcataaaactt |
243 |
Q |
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| T |
23052956 |
aagtggtgatttattagggg-accattccaaaactgcataaaactt |
23052912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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