View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8810A_low_351 (Length: 229)
Name: NF8810A_low_351
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_351 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 32886415 - 32886190
Alignment:
| Q |
1 |
taggataagatgactgcatgtaaggatcgcgatggtcttaactttcgtgacctttaaggttttaaccttgccatgctaggtaagcaaggatggaagttca |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
32886415 |
taggataagatgactgcctgtaaggatcgcgatggtcttaacttttatgacctttaaggttttaaccttgccatgctaggcaagcaaggatggaagttca |
32886316 |
T |
|
| Q |
101 |
tcacaaactcttcctctctcctcaccaaagttctaaaagctaaatattttcctataagcgggttttggggcgccactattggtcatagtccaagtttgac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32886315 |
tcacaaactcttcctctctcctcaccaaagttctcaaagctaaatattttcctataagcgggttttggggcgccactattggtcatagtccaagtttcac |
32886216 |
T |
|
| Q |
201 |
atgaaggagtatctggatcactattc |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
32886215 |
atgaaggagtatctggatcactattc |
32886190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 3 - 226
Target Start/End: Original strand, 1362051 - 1362274
Alignment:
| Q |
3 |
ggataagatgactgcatgtaaggatcgcgatggtcttaactttcgtgacctttaaggttttaaccttgccatgctaggtaagcaaggatggaagttcatc |
102 |
Q |
| |
|
|||||||||| |||| |||||||||| || ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| || || |
|
|
| T |
1362051 |
ggataagatggctgcttgtaaggatcacggtggtcttaactttcgcgaccttgaaggttttaaccttgccatgctaggtaagcaaggatggaagctcctc |
1362150 |
T |
|
| Q |
103 |
acaaactcttcctctctcctcaccaaagttctaaaagctaaatattttcctataagcgggttttggggcgccactattggtcatagtccaagtttgacat |
202 |
Q |
| |
|
| | |||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||| || | |
|
|
| T |
1362151 |
atagactcttcctctctcctcaccaaagttctcaaagctaaatatttccctagaagcgggtttttgggcgccactattggtcatagtccaagtttcacgt |
1362250 |
T |
|
| Q |
203 |
gaaggagtatctggatcactattc |
226 |
Q |
| |
|
| |||||||| |||| |||||||| |
|
|
| T |
1362251 |
ggaggagtatttggagcactattc |
1362274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 25633938 - 25634015
Alignment:
| Q |
81 |
taagcaaggatggaagttcatcacaaactcttcctctctcctcaccaaagttctaaaagctaaatattttcctataag |
158 |
Q |
| |
|
|||||||||||||||| || ||| ||||||||| ||| ||||| ||| | |||| ||||||||||||||| ||||||| |
|
|
| T |
25633938 |
taagcaaggatggaagctcctcaaaaactcttcatctatcctcgccataattctcaaagctaaatatttttctataag |
25634015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 52843363 - 52843137
Alignment:
| Q |
3 |
ggataagatgactgcatgtaaggatcgcgatggtcttaactttcgtgacctttaaggttttaaccttgccatgctaggtaagcaaggatggaagttcatc |
102 |
Q |
| |
|
||||||||||||| | |||||||||| || |||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| || || |
|
|
| T |
52843363 |
ggataagatgactacttgtaaggatcacggtggtctcaactttcgtgaccttgaaggttttaaccttgccatgctaggtaaataaggatggaagctcctc |
52843264 |
T |
|
| Q |
103 |
acaaactcttcctctctcctcaccaaagttctaaaagctaaatattttcctataagcgggttttggggcgccactattggtcatagtccaagtttgacat |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||| || | |
|
|
| T |
52843263 |
acaaactcttcctctctcctcaccaaagttctcaaagctaaatatttccctagaagcgggtttttgggcgccactattggtcatagtccaagtttcacgt |
52843164 |
T |
|
| Q |
203 |
gaaggagtatctggatcactattctga |
229 |
Q |
| |
|
| ||| |||| | || ||||||||||| |
|
|
| T |
52843163 |
ggaggtgtatttagagcactattctga |
52843137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 10533202 - 10532978
Alignment:
| Q |
3 |
ggataagatgactgcatgtaaggatcgcgatggtcttaactttcgtgacctttaaggttttaaccttgccatgctaggtaagcaaggatggaagttcat- |
101 |
Q |
| |
|
||||||||||| ||| ||||||||||||| |||||| || |||||||||||| ||||| |||||||||||||||| |||||||||||||| ||| || | |
|
|
| T |
10533202 |
ggataagatgattgcttgtaaggatcgcggtggtctcaattttcgtgaccttgaaggtgttaaccttgccatgcttggtaagcaaggatgaaagctcttc |
10533103 |
T |
|
| Q |
102 |
cacaaactcttcctctctcctcaccaaagttctaaaagctaaatattttcctataagcgggttttggggcgccactattggtcatagtccaagtttgaca |
201 |
Q |
| |
|
||||||||| |||| ||||||||| | |||||| |||||||||||||| |||| ||| | |||| | |||||| |||||||| |||||||||||| ||| |
|
|
| T |
10533102 |
cacaaactcctcctttctcctcactagagttctcaaagctaaatatttccctagaagaagatttttgagcgccaatattggtcgtagtccaagtttcaca |
10533003 |
T |
|
| Q |
202 |
tgaaggagtatctggatcactattc |
226 |
Q |
| |
|
|| ||||||||||||| |||||||| |
|
|
| T |
10533002 |
tggaggagtatctggagcactattc |
10532978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 3 - 226
Target Start/End: Original strand, 2901497 - 2901720
Alignment:
| Q |
3 |
ggataagatgactgcatgtaaggatcgcgatggtcttaactttcgtgacctttaaggttttaaccttgccatgctaggtaagcaaggatggaagttcatc |
102 |
Q |
| |
|
||||||||||||| | |||||||||| | |||| |||| ||| |||||||| |||||||||||||||||||||| ||||| |||||||||||| || || |
|
|
| T |
2901497 |
ggataagatgactacttgtaaggatcatggtggtgttaatttttgtgaccttgaaggttttaaccttgccatgcttggtaatcaaggatggaagctcttc |
2901596 |
T |
|
| Q |
103 |
acaaactcttcctctctcctcaccaaagttctaaaagctaaatattttcctataagcgggttttggggcgccactattggtcatagtccaagtttgacat |
202 |
Q |
| |
|
||||||||||||| ||||||||| | |||||| |||| ||||||||| |||| |||| | |||| |||||||| ||||||||||||| ||||||| |||| |
|
|
| T |
2901597 |
acaaactcttcctttctcctcactagagttctcaaagataaatatttccctagaagcagctttttgggcgccaatattggtcatagtacaagtttcacat |
2901696 |
T |
|
| Q |
203 |
gaaggagtatctggatcactattc |
226 |
Q |
| |
|
| ||||||||| || |||||||| |
|
|
| T |
2901697 |
ggaggagtatccagagcactattc |
2901720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 150
Target Start/End: Complemental strand, 17086363 - 17086269
Alignment:
| Q |
56 |
aaggttttaaccttgccatgctaggtaagcaaggatggaagttcatcacaaactcttcctctctcctcaccaaagttctaaaagctaaatatttt |
150 |
Q |
| |
|
|||||||||| ||| | |||||||||||||| |||| ||| | ||| ||||||||||| ||| |||| | |||||| ||||||||||||||| |
|
|
| T |
17086363 |
aaggttttaatcttacaatgctaggtaagcatagatgaaagcttctcaagaactcttcctccctcttcactagagttctcaaagctaaatatttt |
17086269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 49 - 226
Target Start/End: Complemental strand, 2927983 - 2927806
Alignment:
| Q |
49 |
gacctttaaggttttaaccttgccatgctaggtaagcaaggatggaagttcatcacaaactcttcctctctcctcaccaaagttctaaaagctaaatatt |
148 |
Q |
| |
|
|||||| |||||||||||||| ||||| | ||||||||| |||||||| || ||||||||||| |||||| || || |||||| |||| || ||||| |
|
|
| T |
2927983 |
gaccttgaaggttttaaccttaccatgttgggtaagcaaagatggaagctcctcacaaactctgactctcttcttactcgagttctcaaagttagatatt |
2927884 |
T |
|
| Q |
149 |
ttcctataagcgggttttggggcgccactattggtcatagtccaagtttgacatgaaggagtatctggatcactattc |
226 |
Q |
| |
|
||||||||| ||| |||| || | ||| ||||||||||||||||||||| ||||| |||||||| |||| |||||||| |
|
|
| T |
2927883 |
ttcctataaacggttttttggacaccaatattggtcatagtccaagtttcacatggaggagtatttggagcactattc |
2927806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 33289190 - 33289254
Alignment:
| Q |
86 |
aaggatggaagttcatcacaaactcttcctctctcctcaccaaagttctaaaagctaaatatttt |
150 |
Q |
| |
|
|||||||||| | ||||||||||||| |||||||||| | || |||||| ||||||||||||||| |
|
|
| T |
33289190 |
aaggatggaaatacatcacaaactctccctctctccttatcagagttctcaaagctaaatatttt |
33289254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University