View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_356 (Length: 228)
Name: NF8810A_low_356
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_356 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 45437132 - 45437359
Alignment:
| Q |
1 |
agttggatcacctagggaaggagtgccagatggctcggtggaatactttgttggcactcgaagaaggatagatatggcaatatccatatccagaacatca |
100 |
Q |
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| T |
45437132 |
agttgtatcacctggggaaggagttccagatgactcggtggaatactttgttggcactcaaagaaggatagatgtggcaatatccatatccggaacatca |
45437231 |
T |
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| Q |
101 |
acagacgccaaaatttgatcctgaatggaagagtacttgggcggtaagctcattaaattcattaagtgcaatgtgaacattaccaatataggtattgata |
200 |
Q |
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| T |
45437232 |
acatacgccaaaatttgatcccgaatggaagagtacttgggcggtaagctcattaaattcattaagtgcagtgtgaacattaccaatataggtattgata |
45437331 |
T |
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| Q |
201 |
gaaccacctattttctttgaatgaatga |
228 |
Q |
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| T |
45437332 |
gaaccatctattgtctttgaatgaatga |
45437359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 120
Target Start/End: Complemental strand, 6759456 - 6759366
Alignment:
| Q |
27 |
cagatggctcggtggaatactttgttggcactcgaagaaggatagatatggcaatatccatatccagaacatcaacagacgccaaaatttgatc |
120 |
Q |
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| T |
6759456 |
cagatgactcagtggaatactttgttggcactc---gaaggacaaaagtggaaatatccatatttgaaacatcaacagaccccaaaatttgatc |
6759366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 7 - 149
Target Start/End: Original strand, 14168768 - 14168910
Alignment:
| Q |
7 |
atcacctagggaaggagtgccagatggctcggtggaatactttgttggcactcgaagaaggatagatatggcaatatccatatccagaacatcaacagac |
106 |
Q |
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| T |
14168768 |
atcacctagggaaggagttccagatggctcagtggaatactttgctggcactcgaagaaggatatatgtggcaatatccatatccggaacatcaacagac |
14168867 |
T |
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| Q |
107 |
gccaaaatttgatcctgaatggaagagtacttgggcggtaagc |
149 |
Q |
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| T |
14168868 |
gccaaaatttgatcccgaatggaagagtactcgggcggtaagc |
14168910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 149 - 228
Target Start/End: Original strand, 14168999 - 14169078
Alignment:
| Q |
149 |
ctcattaaattcattaagtgcaatgtgaacattaccaatataggtattgatagaaccacctattttctttgaatgaatga |
228 |
Q |
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| T |
14168999 |
ctcattaaattcattaagtgcagtgtgaacattaccaatatatgtattgatagacccatctatcgtctttgaatgaatga |
14169078 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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