View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8810A_low_360 (Length: 226)
Name: NF8810A_low_360
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_360 |
 | |
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| [»] chr1 (3 HSPs) |
| |
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| [»] chr7 (2 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] chr2 (3 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 13867882 - 13868107
Alignment:
| Q |
1 |
ttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcattgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
13867882 |
ttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggtatcattgttggcgaggcagcattgtg |
13867981 |
T |
|
| Q |
101 |
tgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatg |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13867982 |
tgttactgggtgtggcatggcagagtctgtttctcatttatttctacattgtgctacttttggtactttatggcattttgtcaggtgttggattggaatg |
13868081 |
T |
|
| Q |
201 |
tcaggtgctgatccccttaatattga |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
13868082 |
tcaggtgctgatccccttaatattga |
13868107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 226
Target Start/End: Complemental strand, 33150937 - 33150843
Alignment:
| Q |
132 |
tctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctgatccccttaatattga |
226 |
Q |
| |
|
|||||||||||||| || || || |||||||| | ||||||||| || |||||| |||||| |||||||||||||| || |||||||||||||| |
|
|
| T |
33150937 |
tctcatttatttattcactgcgccacttttggctcattgtggcatcttatcaggtcttggatcggaatgtcaggtgccgacccccttaatattga |
33150843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 223
Target Start/End: Original strand, 26510426 - 26510646
Alignment:
| Q |
3 |
aaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcattgtgtg |
102 |
Q |
| |
|
||||| ||||| |||||||| | ||||| ||||| |||||||||||||||||| | ||| | | ||||| | |||| | ||| |||| |||||| |
|
|
| T |
26510426 |
aaggtctccatctttgcttgacggttgttgcgggacaggttgccgactaagaataatcttatgagacgtggagtaatcaataccgaagcagttatgtgtg |
26510525 |
T |
|
| Q |
103 |
ttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtc |
202 |
Q |
| |
|
|||| || || |||| || ||||||| |||| || ||||| |||||||| | ||| ||||| ||||||||| | |||||| |||||| |||||||| |
|
|
| T |
26510526 |
ttacaggatgcggcaaggaagagtctgcgcctcacttgtttattcattgtgccattttcggtacattgtggcatcatatcaggtcttggatcggaatgtc |
26510625 |
T |
|
| Q |
203 |
aggtgctgatccccttaatat |
223 |
Q |
| |
|
||||| ||| ||| ||||||| |
|
|
| T |
26510626 |
aggtgttgacccctttaatat |
26510646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 35213706 - 35213481
Alignment:
| Q |
1 |
ttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcattgtg |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
35213706 |
ttaaggtttccatttttgcttgaagattgttacgggataggttgccgactaagaatcaccttctccggcatggcatcattgttggcgaggcagcattgtg |
35213607 |
T |
|
| Q |
101 |
tgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatg |
200 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35213606 |
tgttactgggtgcggcatggcagagtctgtttcccatttatttatacattgtgctactttcgttactttgtggcattttgtcaggtgttggattggaatg |
35213507 |
T |
|
| Q |
201 |
tcaggtgctgatccccttaatattga |
226 |
Q |
| |
|
||||||| |||||||||||||||||| |
|
|
| T |
35213506 |
tcaggtgttgatccccttaatattga |
35213481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 224
Target Start/End: Complemental strand, 26855784 - 26855563
Alignment:
| Q |
3 |
aaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcattgtgtg |
102 |
Q |
| |
|
||||||||||||||||||||| |||| || || ||||||||||||||||||||||| ||| | |||||||||| |||| ||||||| |||||| |
|
|
| T |
26855784 |
aaggtttccatttttgcttggcgattattgcgtgataggttgccgactaagaatcatctttttaggcgtggcataatcaacagcgaggcttgtatgtgtg |
26855685 |
T |
|
| Q |
103 |
ttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtc |
202 |
Q |
| |
|
| || ||||| || |||| ||| || |||||| | ||||| ||||| | ||||||||| ||||||||||| || |||||| || ||| |||||||| |
|
|
| T |
26855684 |
tcacagggtgcggtatggaagagactacatctcatctttttattcattgcaccacttttggttctttgtggcatcttatcaggtctttgatcggaatgtc |
26855585 |
T |
|
| Q |
203 |
aggtgctgatccccttaatatt |
224 |
Q |
| |
|
||||||||| || |||||||| |
|
|
| T |
26855584 |
aggtgctgacccttttaatatt |
26855563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 43516797 - 43517022
Alignment:
| Q |
1 |
ttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcattgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
43516797 |
ttaaggtttccatttttgcttggagattgttatgggataggttgccgactaagaatcatctcctccggcgtggcatcatcgttggcgaggtagcattgtg |
43516896 |
T |
|
| Q |
101 |
tgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatg |
200 |
Q |
| |
|
|||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43516897 |
tgttactgggtgcggcatgacatagtctgtttctcatttatttatacattgtgctactttcggtactttgtggcattttatcaggtgttggattggaatg |
43516996 |
T |
|
| Q |
201 |
tcaggtgctgatccccttaatattga |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
43516997 |
tcaggtgctgatccccttaatattga |
43517022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 20544156 - 20543933
Alignment:
| Q |
3 |
aaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcattgtgtg |
102 |
Q |
| |
|
||||||||||||||| ||||| |||| || || |||||||||||||||||||| || ||||| |||||||||| |||| |||||| || |||||| |
|
|
| T |
20544156 |
aaggtttccatttttacttggcgattattgcgagataggttgccgactaagaaccatcttctaaggcgtggcataatcaacggcgagacaagtatgtgtg |
20544057 |
T |
|
| Q |
103 |
ttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtc |
202 |
Q |
| |
|
| || ||||| || |||| ||| || |||||||||||||| || || || ||||||||| | ||||||||| || |||||| |||||| |||||||| |
|
|
| T |
20544056 |
tcacagggtgcggtatggaagagactacatctcatttatttattcactgcgccacttttggttcattgtggcatcttatcaggtcttggatcggaatgtc |
20543957 |
T |
|
| Q |
203 |
aggtgctgatccccttaatattga |
226 |
Q |
| |
|
||||||||| ||| |||||||||| |
|
|
| T |
20543956 |
aggtgctgacccctttaatattga |
20543933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38295820 - 38295784
Alignment:
| Q |
1 |
ttaaggtttccatttttgcttggagattgttacggga |
37 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
38295820 |
ttaaagtttccatttttgcttggaggttgttacggga |
38295784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 40513773 - 40513998
Alignment:
| Q |
1 |
ttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcattgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| | || |||||||||||||| |
|
|
| T |
40513773 |
ttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttcttcggcgtggtatcatcgtcggtgaggcagcattgtg |
40513872 |
T |
|
| Q |
101 |
tgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatg |
200 |
Q |
| |
|
|||| | |||||||||||||| |||||||| |||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
40513873 |
tgtttccgggtgtggcatggcagagtctgtctctcatttatttctacattgtcctacttttggtactttatggcattttgtcaggtgttggattggaatg |
40513972 |
T |
|
| Q |
201 |
tcaggtgctgatccccttaatattga |
226 |
Q |
| |
|
||| |||||||||||||||||||||| |
|
|
| T |
40513973 |
tcatgtgctgatccccttaatattga |
40513998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 34829490 - 34829267
Alignment:
| Q |
3 |
aaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcattgtgtg |
102 |
Q |
| |
|
||||| ||||| ||||||||| | ||||| ||||| |||||| ||| ||||||| | ||||| | ||||| | |||| || ||| | || |||||| |
|
|
| T |
34829490 |
aaggtctccatctttgcttggcggttgttgcgggacaggttgtcgattaagaataatcttctaagacgtggagtaatcaatgccgaagtagttatgtgtg |
34829391 |
T |
|
| Q |
103 |
ttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtc |
202 |
Q |
| |
|
|||| ||||| |||| || ||||||| |||| || ||||| |||||||| ||||| |||| ||||||||| | |||||| |||||| |||||||| |
|
|
| T |
34829390 |
ttacagggtgcggcaaggaagagtctgcgcctcacttgtttattcattgtgccactttcagtacattgtggcatcatatcaggtcttggatcggaatgtc |
34829291 |
T |
|
| Q |
203 |
aggtgctgatccccttaatattga |
226 |
Q |
| |
|
||||| | | ||| |||||||||| |
|
|
| T |
34829290 |
aggtgttaacccctttaatattga |
34829267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 11196422 - 11196199
Alignment:
| Q |
3 |
aaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcattgtgtg |
102 |
Q |
| |
|
||||||||||||||| ||||| ||||||| || |||||||||||||||||||| || ||||| |||||||||| |||| ||||||||||| |||||| |
|
|
| T |
11196422 |
aaggtttccatttttacttggcgattgttgcgagataggttgccgactaagaaccatcttctaaggcgtggcataatcaatggcgaggcagttatgtgtg |
11196323 |
T |
|
| Q |
103 |
ttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtc |
202 |
Q |
| |
|
|||| ||||| || ||||| ||| || |||||||||||||| || || || ||||||||| | ||||||||| || |||||| |||||| ||||||| |
|
|
| T |
11196322 |
ttacagggtgcggtatggcagagattgcgtctcatttatttattcactgcgccacttttggttcattgtggcatcttatcaggtcttggatcagaatgtc |
11196223 |
T |
|
| Q |
203 |
aggtgctgatccccttaatattga |
226 |
Q |
| |
|
||||| || | |||||||||||| |
|
|
| T |
11196222 |
aggtgtcgacctccttaatattga |
11196199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 211
Target Start/End: Complemental strand, 32624425 - 32624217
Alignment:
| Q |
3 |
aaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcattgtgtg |
102 |
Q |
| |
|
|||||||||||||||| |||| |||| || | |||||||||||||||||||| || ||||| |||||||||| |||| ||||||||| |||||| |
|
|
| T |
32624425 |
aaggtttccatttttgtttggcgattattgagagataggttgccgactaagaaccatcttctaaggcgtggcataatcaacggcgaggcatgtatgtgtg |
32624326 |
T |
|
| Q |
103 |
ttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgtc |
202 |
Q |
| |
|
| || || || || |||| ||| || |||||||||||||| ||||| || ||||||||| | ||||||||| || |||||| ||||||||||||||| |
|
|
| T |
32624325 |
tcacaggatgcggtatggaagagactacatctcatttatttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggattggaatgtc |
32624226 |
T |
|
| Q |
203 |
aggtgctga |
211 |
Q |
| |
|
||||||||| |
|
|
| T |
32624225 |
aggtgctga |
32624217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 144246 - 144301
Alignment:
| Q |
156 |
acttttggtactttgtggcattttgtcaggtgttggattggaatgtcaggtgctga |
211 |
Q |
| |
|
||||||||| ||||||||||| || |||||| |||||| ||||||||||||||||| |
|
|
| T |
144246 |
acttttggttctttgtggcatcttatcaggtcttggatcggaatgtcaggtgctga |
144301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 3 - 226
Target Start/End: Original strand, 21367987 - 21368210
Alignment:
| Q |
3 |
aaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggca-gcattgtgt |
101 |
Q |
| |
|
||||||||||||||| ||||| |||| || | |||||||||||||||||||| || || || |||||||||| |||| ||||||||| | | | ||| |
|
|
| T |
21367987 |
aaggtttccattttttcttggcgattattgagagataggttgccgactaagaaccatctcctaaggcgtggcataatcaacggcgaggcatgtaat-tgt |
21368085 |
T |
|
| Q |
102 |
gttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatgt |
201 |
Q |
| |
|
|| || ||||| || |||| ||| || ||| || | ||||| ||||| || ||||||||| | ||||||||| || |||||| |||||| ||||||| |
|
|
| T |
21368086 |
gtcacagggtgcggtatggaagagactacatcttatctttttattcattgcgccacttttggttcattgtggcatcttatcaggtcttggatcggaatgt |
21368185 |
T |
|
| Q |
202 |
caggtgctgatccccttaatattga |
226 |
Q |
| |
|
|||||||||| || ||||||||||| |
|
|
| T |
21368186 |
caggtgctgaccctcttaatattga |
21368210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 14687075 - 14687285
Alignment:
| Q |
1 |
ttaaggtttccatttttgcttggagattgttacgggataggttgccgactaagaatcaccttctccggcgtggcatcatcattggcgaggcagcattgtg |
100 |
Q |
| |
|
||||||||||||||||||||||| |||| || || ||||||||||||||||||||||| ||| | |||||||||| |||| | |||| |||| |
|
|
| T |
14687075 |
ttaaggtttccatttttgcttggcgattattgcgtgataggttgccgactaagaatcatctttttaggcgtggcataatcaacagtgaggtttgtatgtg |
14687174 |
T |
|
| Q |
101 |
tgttactgggtgtggcatggctgagtctgtttctcatttatttatacattgtgctacttttggtactttgtggcattttgtcaggtgttggattggaatg |
200 |
Q |
| |
|
||| || ||||| || ||| ||| || |||||| | ||||| ||||| | ||||||||| ||||||||||| || |||||| |||||| |||||| |
|
|
| T |
14687175 |
tgtcacagggtgcggtgtggaagagactacatctcatctttttattcattgcaccacttttggttctttgtggcatcttatcaggtcttggatcggaatg |
14687274 |
T |
|
| Q |
201 |
tcaggtgctga |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
14687275 |
tcaggtgctga |
14687285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 26513795 - 26513744
Alignment:
| Q |
3 |
aaggtttccatttttgcttggagattgttacgggataggttgccgactaaga |
54 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||| |||| |
|
|
| T |
26513795 |
aaggtttccatttttgcttggcagttgttgcgggataggttgccgaccaaga |
26513744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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