View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_361 (Length: 226)
Name: NF8810A_low_361
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_361 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 12 - 226
Target Start/End: Complemental strand, 6185950 - 6185736
Alignment:
| Q |
12 |
gagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagcattattcaag |
111 |
Q |
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| T |
6185950 |
gagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagcattattcaag |
6185851 |
T |
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| Q |
112 |
gtatggcagctagtagtctttgttgcatcgctttagcgtgtacagaaggctcagacgaaaagctaggaccagaaggagacaacaccaagctggtggtaaa |
211 |
Q |
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| T |
6185850 |
gtatggcagctagtagtcttcgttgcatcgctttagcgtgtacagaagtctcagacgaaaagctaggacatgaaggagacaacaccaagatggtggtaaa |
6185751 |
T |
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| Q |
212 |
agcgaatgatttaac |
226 |
Q |
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| T |
6185750 |
agagaatgatttaac |
6185736 |
T |
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Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 12 - 155
Target Start/End: Complemental strand, 4236857 - 4236714
Alignment:
| Q |
12 |
gagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaaagcattattcaag |
111 |
Q |
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||||||||||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||||| | ||| ||||||||||||| |||||||||| |
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| T |
4236857 |
gagatggtactaagaatgtgttcaaaataccatgatggttttggaatttcgaaagatcttgacaatgaaaccatgttgaaattcgaaaggattattcaag |
4236758 |
T |
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| Q |
112 |
gtatggcagctagtagtctttgttgcatcgctttagcgtgtaca |
155 |
Q |
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| T |
4236757 |
gtatggcggctagtagtcttcgttgcatcgctttagcgtataca |
4236714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 21847708 - 21847622
Alignment:
| Q |
12 |
gagatggtactaagaatgtgttcaagatactatgatggttatggaattttgaaagatcttgacaatgaatctatgctgaaattcgaa |
98 |
Q |
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||||||||||||||||||||||||||||| || ||| | |||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
21847708 |
gagatggtactaagaatgtgttcaagatattacattggctgtggaattttgaaagatcttgacaatggatctatgttgaaattcgaa |
21847622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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