View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_365 (Length: 225)
Name: NF8810A_low_365
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_365 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 21314489 - 21314265
Alignment:
| Q |
1 |
tcaacggggaccccaacgagacctttccactgttatcagcaccaatatgttggatcataagctgggaggatgcctggtagaagaaggcattcctgtagat |
100 |
Q |
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| T |
21314489 |
tcaacggggaccccaacgagacctttccactgttatcagcaccaatatgttggatcataaggggggaggatgcctggtagacgaaggcattcctgtagat |
21314390 |
T |
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| Q |
101 |
attttgtaccaaagcacattcgaaagattagagctaagataggagaacctgagatactgctacggaatggaagcatttgcacccagtggcacgtgcacac |
200 |
Q |
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| T |
21314389 |
attttgtaccaaagcacattcgaaagattagagctaagataggagaacctgaggtactgctacagaatggaaccatttgcacccaacggcacatgcacgc |
21314290 |
T |
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| Q |
201 |
tcccatagggatacgtcactttgga |
225 |
Q |
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| T |
21314289 |
tcccatagggatacgtcactttgga |
21314265 |
T |
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Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 168
Target Start/End: Complemental strand, 22413053 - 22412931
Alignment:
| Q |
46 |
tatgttggatcataagctgggaggatgcctggtagaagaaggcattcctgtagatattttgtaccaaagcacattcgaaagattagagctaagataggag |
145 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| || | |||||| ||||| |
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| T |
22413053 |
tatgttggatcatagagtgggaggatgcctggtagacgaaggtaaccctgtagatattttgtaccaaagcacattcgaaaggttgggactaagaaaggag |
22412954 |
T |
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| Q |
146 |
aacctgagatactgctacggaat |
168 |
Q |
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| T |
22412953 |
gacctgcgatattgctacggaat |
22412931 |
T |
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