View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_367 (Length: 224)
Name: NF8810A_low_367
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_367 |
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| [»] scaffold0432 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 116; Significance: 4e-59; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 9804675 - 9804802
Alignment:
| Q |
39 |
tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga |
138 |
Q |
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| T |
9804675 |
tcctcccatcctcatttctcattctcttgaaaccctaaacacaattttctccctcaatcgctgttgccaacctctctccaagcaccatcactgagatcga |
9804774 |
T |
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| Q |
139 |
catcgatcagaaaaaagaaccatgaaac |
166 |
Q |
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| T |
9804775 |
catcgatcagaaaaaagaaccatgaaac |
9804802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 9817550 - 9817693
Alignment:
| Q |
11 |
tgagatggacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacc |
110 |
Q |
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|||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| |||||||| ||||| |
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| T |
9817550 |
tgagatcgacatcaatcaaacaaaagaatcctcccatcctcatttctcattatcttgaaaccctaaacacaattttccccctcatccgccgttgacaacc |
9817649 |
T |
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| Q |
111 |
tctctcctagcaccatcactgagatcgacatcgatcagaaaaaa |
154 |
Q |
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| T |
9817650 |
tctctcctaccaacattgctgagatcgacatcgatcagaaaaaa |
9817693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 9817438 - 9817577
Alignment:
| Q |
18 |
gacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcc |
117 |
Q |
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| T |
9817438 |
gacatcgatcaatcaaaagaatcctccaatcctcatttctcattcttttgaaaccctaaacaaagttttctccctcagccgctgctgccaacctctctcc |
9817537 |
T |
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| Q |
118 |
tagcaccatcactgagatcgacatcgatcagaaaaaagaa |
157 |
Q |
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| T |
9817538 |
taccaccataggtgagatcgacatcaatcaaacaaaagaa |
9817577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 39 - 147
Target Start/End: Original strand, 9817341 - 9817448
Alignment:
| Q |
39 |
tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga |
138 |
Q |
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||||||||||||||||||||||||||| ||||||||||||| | |||||||||||| ||||| |||||||||||||| || ||||||| ||| |||||| |
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| T |
9817341 |
tcctcccatcctcatttctcattctctagaaaccctaaacacagttttctccctcagccgccgctgccaacctctctcataccaccatcgctg-gatcga |
9817439 |
T |
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| Q |
139 |
catcgatca |
147 |
Q |
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||||||||| |
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| T |
9817440 |
catcgatca |
9817448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 160 - 224
Target Start/End: Complemental strand, 9804899 - 9804835
Alignment:
| Q |
160 |
atgaaacgaggttgaagtttcatgaaaactccatcaaaagagataaccattcatgagaggttggc |
224 |
Q |
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| T |
9804899 |
atgaaacgaggttgaactttcatgaaaactccatcaaaagagataaccattcatgagaggttggc |
9804835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 208
Target Start/End: Complemental strand, 9817821 - 9817777
Alignment:
| Q |
164 |
aacgaggttgaagtttcatgaaaactccatcaaaagagataacca |
208 |
Q |
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| T |
9817821 |
aacgaggttgaagtttcatgaaaattccatcaaaagagataacca |
9817777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 161
Target Start/End: Original strand, 11558 - 11708
Alignment:
| Q |
11 |
tgagatggacatcaatcaaacaaaataatcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacc |
110 |
Q |
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|||||| ||||| ||||||||||| |||||||||||||||| ||| |||||||||||| | | ||||||| |||| || ||||| ||| | |||||| |
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| T |
11558 |
tgagatcgacattgatcaaacaaaagaatcctcccatcctcacttcccattctcttgaatctcaaaacaaagttttatctctcaactcccgctaccaacc |
11657 |
T |
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| Q |
111 |
tctctcctagcaccatcactgagatcgacatcgatcagaaaaaagaaccat |
161 |
Q |
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| T |
11658 |
tctctcataccaccatcgctgagatcaacatcgattggaaaaaagaaccat |
11708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 11833 - 11788
Alignment:
| Q |
160 |
atgaaacgaggttgaagtttcatgaaaactccatcaaaagagataa |
205 |
Q |
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| T |
11833 |
atgaaacgaggttgaagtttcatgaaaactccatcaaaagagataa |
11788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 157
Target Start/End: Original strand, 11467 - 11585
Alignment:
| Q |
39 |
tcctcccatcctcatttctcattctcttgaaaccctaaacaaaattttctccctcaatcgccgttgccaacctctctcctagcaccatcactgagatcga |
138 |
Q |
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||||||||||||||||||| |||||| ||||| || | ||| | ||||||||||| || || ||||||||||||| ||| ||| | | |||||||||| |
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| T |
11467 |
tcctcccatcctcatttcttattctcatgaaatcccacacacagttttctccctcggccgtcgctgccaacctctcttctaccactaccgctgagatcga |
11566 |
T |
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| Q |
139 |
catcgatcagaaaaaagaa |
157 |
Q |
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| T |
11567 |
cattgatcaaacaaaagaa |
11585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 42778853 - 42778900
Alignment:
| Q |
160 |
atgaaacgaggttgaagtttcatgaaaactccatcaaaagagataacca |
208 |
Q |
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| T |
42778853 |
atgaaacgaggttgaa-ttgcatgaaaactccgtcaaaagagataacca |
42778900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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