View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_37 (Length: 410)
Name: NF8810A_low_37
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Complemental strand, 49123935 - 49123543
Alignment:
| Q |
17 |
gccggattagaaaattaacaatacagacaccaagaggtagttagaaatgatgcacaaaactcaaagattttctttgcgtgattgcatgcatatatcaagc |
116 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49123935 |
gccgaattagaaaattaacaatacagacaccaagaggtagttagaaatgatgcacaaaactcaaagattttctttgcgtgattgcatgcatatatcaagc |
49123836 |
T |
|
| Q |
117 |
atcaaatagaagtccccccttccaggcgtatcctcttgggacccgtatcttcaccttggttgcaagccgttccgcccctgttttccttggcctctactaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49123835 |
atcaaatagaagtccccccttccaggcgtatcctcttgggacccgtctcttcaacttggttgcaagccgttccgcccctgttttccttggcctctactaa |
49123736 |
T |
|
| Q |
217 |
acatcttttgtaaggtttgaaccctgttcgacgagtcttaagtttaccttgtccaagacccatggttagaaatccctcctcattgttattttgtacaaat |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49123735 |
acatcttttgtaaggtttgaaccctgttcgacgagtcttaagtttaccttgtccaagacccatggttagaaatccctcctcattgttattttgtacaaat |
49123636 |
T |
|
| Q |
317 |
ggtaggttttgctgtgcctggtcacaattacaaatgcatttcttgctctcaaggtgatctttgtggtctgttttttgctcgttatccttcatg |
409 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49123635 |
ggtaggttttgctgtgcctggtcacaattacaaatgcatttcttgctctcaaggtgatctttgtggtctgttttttgctcgttatccttcatg |
49123543 |
T |
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