View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_371 (Length: 222)
Name: NF8810A_low_371
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_371 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 40060962 - 40060741
Alignment:
| Q |
1 |
gaacatcatatatttagtatgtaggctgaaggacataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtactt |
100 |
Q |
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| T |
40060962 |
gaacaacatatatttagtatgtaggctgaaggacataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtactt |
40060863 |
T |
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| Q |
101 |
cggtcaaagttggttcctccatggtactgtttttgagcaggcaataaaaaatgatacagtatcaactaattcctcttaaaaactggccttaagaacaata |
200 |
Q |
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| T |
40060862 |
cggtcaaagttggttcctccatggtactgtttttgagcaggcaataaaaaatgatacagtatcaactaattcctcttaaaaactggccttaagaacaata |
40060763 |
T |
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| Q |
201 |
ccatatagtaaattgaacttgt |
222 |
Q |
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| T |
40060762 |
ccatatagtaaattgaacttgt |
40060741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 40079055 - 40078911
Alignment:
| Q |
34 |
cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagttggttcctccatggtactgtttt |
133 |
Q |
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| T |
40079055 |
cataccatactcatcaatcggtgcatcataatcataacttgtagcaatgaaaggtccgccggtacttcggtcaaagttggttcctccatggtactgtttt |
40078956 |
T |
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| Q |
134 |
tgagcaggcaataaaaaatgatacagtatcaactaattcctctta |
178 |
Q |
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| T |
40078955 |
tgggcaagcaataaaaaatgataaagtattagctaattcctctta |
40078911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 34 - 178
Target Start/End: Complemental strand, 40086828 - 40086684
Alignment:
| Q |
34 |
cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagttggttcctccatggtactgtttt |
133 |
Q |
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| T |
40086828 |
cataccatactcatcaatcggtgcatcaaaatcataacttgttgcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgtttt |
40086729 |
T |
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| Q |
134 |
tgagcaggcaataaaaaatgatacagtatcaactaattcctctta |
178 |
Q |
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| T |
40086728 |
tagtcaagcaatgaaaaatgatacagtatcagctaattcctctta |
40086684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 22014420 - 22014530
Alignment:
| Q |
34 |
cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagttggttcctccatggtactgtttt |
133 |
Q |
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| T |
22014420 |
cataccatactcatcaatgggtgcatcataatcataactcgttgaaatgaaaggtccacccgttgttcgaccaaagttagtccctccatggtactatttt |
22014519 |
T |
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| Q |
134 |
tgagcaggcaa |
144 |
Q |
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| T |
22014520 |
agagcaagcaa |
22014530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Original strand, 52548939 - 52548999
Alignment:
| Q |
68 |
taacttgtagcaatgaatggtccgccggtacttcggtcaaagttggttcctccatggtact |
128 |
Q |
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| T |
52548939 |
taacttgtagcaatgaagggtccaccagaagttcgatcaaagttagttcctccatgatact |
52548999 |
T |
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