View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_375 (Length: 221)
Name: NF8810A_low_375
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_375 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 3895350 - 3895519
Alignment:
| Q |
1 |
ataagacaaaagaaggagctgagaaaacggcagagaagacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaa |
100 |
Q |
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| T |
3895350 |
ataagacaaaagaaggagctgagaaaacggcggagaagacgggggaggttgctgggtcggcgacagaggctttgaagagtgctggggaaatggcgaagaa |
3895449 |
T |
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| Q |
101 |
gacggcccaaggagcgtgggagacagcgaaggatgcaacacaaaagatcaaggagactgttgttggaaag |
170 |
Q |
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| T |
3895450 |
gacggcccaaggagcgtgggagacagcgaaggatgcaacacaaaagatcaaggagactgttgttggaaag |
3895519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 192 - 221
Target Start/End: Original strand, 3895538 - 3895567
Alignment:
| Q |
192 |
cgtggtagtggtggttctggtgtagtagta |
221 |
Q |
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| T |
3895538 |
cgtggtagtggtggttctggtgtagtagta |
3895567 |
T |
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