View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8810A_low_377 (Length: 220)
Name: NF8810A_low_377
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_377 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 95 - 207
Target Start/End: Complemental strand, 37363327 - 37363215
Alignment:
| Q |
95 |
tgttttggtgaatttccttattgacacattaccaacagttcctgaatgaagcatagttctgattttgcttgtttgtccacttgcacatgtcagaaggttt |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37363327 |
tgttttggtgaatttccttattgacacattaccaacagttcctgaatgaagcatagttctgattttgcttgtttgtccacttgcacatgtcagaaggttt |
37363228 |
T |
|
| Q |
195 |
agctctgatgtcc |
207 |
Q |
| |
|
||||||||||||| |
|
|
| T |
37363227 |
agctctgatgtcc |
37363215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 103
Target Start/End: Complemental strand, 41985852 - 41985770
Alignment:
| Q |
24 |
atggaggggacatgaaattcctggtagagagtgagcgtga---gttgttgctagtagacatatatgactctcattgttttggt |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41985852 |
atggaggggacatgaaattcctggtagagagtgagggtgatcagttgttgctagtagacatatatgactctcattgttttggt |
41985770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 41981073 - 41980997
Alignment:
| Q |
26 |
ggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttgg |
102 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |||| || |||||||| ||||| ||| ||||||||||| |||| |
|
|
| T |
41981073 |
ggaggggatgtgaaattcctggtagagagtgagggtgaattattgctagtggacatttatcactctcattgtgttgg |
41980997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 44688680 - 44688758
Alignment:
| Q |
24 |
atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttgg |
102 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| |||||||||||| ||||||| |
|
|
| T |
44688680 |
atggaggggacataaaattcctggtagagagtgaaggtgagttgttgctagtggacatctatgactctcatggttttgg |
44688758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 94
Target Start/End: Original strand, 13170579 - 13170649
Alignment:
| Q |
24 |
atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcat |
94 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| ||| |||||||||||||||| ||||| |||||| ||||| |
|
|
| T |
13170579 |
atggaggggacatgaaattcttggtcgagagcgagggtgagttgttgctagtggacatctatgaccctcat |
13170649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 18991422 - 18991344
Alignment:
| Q |
24 |
atggaggggacatgaaattcctggtagagagtgagcgtgagttgttgctagtagacatatatgactctcattgttttgg |
102 |
Q |
| |
|
|||||||||| ||||||||| |||||||| |||| |||||||||||||||| ||||| | |||||| ||||||||||| |
|
|
| T |
18991422 |
atggaggggatatgaaattcttggtagagtgtgaaggtgagttgttgctagtggacatctgtgactcgcattgttttgg |
18991344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University