View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_378 (Length: 220)
Name: NF8810A_low_378
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_378 |
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Alignment Details
Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 87 - 219
Target Start/End: Original strand, 42032899 - 42033029
Alignment:
| Q |
87 |
ctttgcctctacctatccggactgtcttcttgggtctctccttgcgcttttccttgctgggtgcgctggttgtggcggggcccttttcgggggccatttc |
186 |
Q |
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| T |
42032899 |
ctttgcctctacctttccagcctgtcttcttg--tctctccttgcgcttttccttgttgggtgcgctggttgtggtggggcccttttcgggggccatttt |
42032996 |
T |
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| Q |
187 |
ggtgttggttttcttcttctttttcttggtgtg |
219 |
Q |
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| T |
42032997 |
ggtgttggttttcttcttctttttcttggtgtg |
42033029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 87 - 219
Target Start/End: Complemental strand, 46028369 - 46028237
Alignment:
| Q |
87 |
ctttgcctctacctatccggactgtcttcttgggtctctccttgcgcttttccttgctgggtgcgctggttgtggcggggcccttttcgggggccatttc |
186 |
Q |
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| T |
46028369 |
ctttgcctctacctatccaacttgtcttcttgggtctctccttgcgcttttccttgctgggtgtgctggttgtgacggaaccctttccgggggccatttt |
46028270 |
T |
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| Q |
187 |
ggtgttggttttcttcttctttttcttggtgtg |
219 |
Q |
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| T |
46028269 |
ggtgttggttttcttcttctttttcttggtgtg |
46028237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 19513534 - 19513631
Alignment:
| Q |
96 |
tacctatccggactgtcttcttgggtctctccttgcgc-ttttccttgctgggtgcgctggttgtggcggggcccttttcgggggccatttcggtgtt |
192 |
Q |
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| T |
19513534 |
tacctatccgacctgtcttcttgggtctctccttgcgctttttccttgttgggtgcgcttggtatggcgggtccctttctgggggccttttgggtgtt |
19513631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 87 - 146
Target Start/End: Original strand, 52372835 - 52372895
Alignment:
| Q |
87 |
ctttgcctctacctatccggactgtcttcttgggtctctccttgcgc-ttttccttgctgg |
146 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
52372835 |
ctttgcctctacctctccggcctgtcttcttgggtctctccttgcgctttttccttgctgg |
52372895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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