View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_38 (Length: 408)

Name: NF8810A_low_38
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_38
NF8810A_low_38
[»] chr7 (8 HSPs)
chr7 (158-315)||(7142483-7142642)
chr7 (13-159)||(7141343-7141489)
chr7 (314-404)||(7143728-7143818)
chr7 (226-315)||(9405377-9405466)
chr7 (171-314)||(10670060-10670205)
chr7 (196-323)||(9070895-9071025)
chr7 (248-310)||(26839717-26839779)
chr7 (198-276)||(3400295-3400375)
[»] chr4 (6 HSPs)
chr4 (163-315)||(47024273-47024427)
chr4 (189-315)||(17024449-17024577)
chr4 (176-315)||(10451002-10451145)
chr4 (255-315)||(12806479-12806539)
chr4 (176-270)||(10319794-10319890)
chr4 (196-315)||(15192700-15192820)
[»] chr5 (5 HSPs)
chr5 (171-307)||(26329585-26329723)
chr5 (224-315)||(12265126-12265217)
chr5 (224-314)||(20715083-20715172)
chr5 (234-314)||(17028776-17028857)
chr5 (196-289)||(25681066-25681161)
[»] scaffold0650 (1 HSPs)
scaffold0650 (176-315)||(5257-5398)
[»] chr3 (4 HSPs)
chr3 (177-314)||(13911745-13911884)
chr3 (205-289)||(33578234-33578320)
chr3 (252-312)||(33914126-33914186)
chr3 (196-289)||(19218745-19218839)
[»] chr1 (4 HSPs)
chr1 (171-315)||(26657936-26658082)
chr1 (203-314)||(23519259-23519370)
chr1 (200-314)||(12810635-12810751)
chr1 (196-258)||(34533099-34533163)
[»] chr8 (4 HSPs)
chr8 (226-315)||(22892762-22892851)
chr8 (226-315)||(11309814-11309903)
chr8 (224-312)||(32239765-32239853)
chr8 (200-315)||(28900845-28900962)
[»] chr6 (2 HSPs)
chr6 (224-314)||(17860003-17860094)
chr6 (224-315)||(30235890-30235981)
[»] scaffold0282 (1 HSPs)
scaffold0282 (176-315)||(22140-22281)


Alignment Details
Target: chr7 (Bit Score: 137; Significance: 2e-71; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 158 - 315
Target Start/End: Original strand, 7142483 - 7142642
Alignment:
Q  158 agtgcaaaagactagttctcttctcctacatcctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggtt 255  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||  |||||||||||||||||||||| ||||||    
T  7142483 agtgcaaaagactagttctcttctcctacatcctacctaatcatttgctataaatagagactcttgcactcattattattcatttagaacactgacggtt 7142582  T
Q  256 caagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7142583 caagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 7142642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 7141343 - 7141489
Alignment:
Q  13 atactcgtatgacatctaggcgtggtagatagtgaggagacattgctctcatttcaagtctcctcaaggttgtgaaggttttgttgcttctctgatcact 112  Q
    |||||||||||||||||||||||||||| || || ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  7141343 atactcgtatgacatctaggcgtggtaggtaatggggagacattgctctcatttcacgtctcctcaaggttgtgaaggttttgttgctactctgatcact 7141442  T
Q  113 tcctatttcacaaacattttagaaaatctgcaatattctgatttaag 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  7141443 tcctatttcacaaacattttagaaaatctgcaatattctgatttaag 7141489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 314 - 404
Target Start/End: Original strand, 7143728 - 7143818
Alignment:
Q  314 tcaaggtatgaacgaatcttggaaagcatcggtagaagctaacatagaggctttggagcaacttgcagaggtacgacattagatggatctg 404  Q
    |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7143728 tcaaggtatgaaggaatctaggaaagcatcggtagaagctaacatagaggctttggagcaacttgcagaggtacgacattagatggatctg 7143818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 226 - 315
Target Start/End: Complemental strand, 9405466 - 9405377
Alignment:
Q  226 cattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 315  Q
    ||||||| |||||| |||||| |||||||||||||||| |||||||| | |||||||||||||| ||||| |||||||||||||||||||    
T  9405466 cattatttttcattcagaacaataacggttcaagacaagggtcaaacgtcagagcttcaaggcaggatttattccttctcttgttctctc 9405377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 171 - 314
Target Start/End: Complemental strand, 10670205 - 10670060
Alignment:
Q  171 agttctcttctcctacatcctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtc 268  Q
    |||| |||||||||| | ||||||||||||||| |||||||||||||| | |||||  |||||| |||||| | |||| | | |||||||  ||| ||||    
T  10670205 agttatcttctcctaaaccctacccaatcattttctataaatagagacccttgcactcattatttttcattcaaaacattgatggttcaaagcaagggtc 10670106  T
Q  269 aaacattagagcttcaaggcaagatttcttccttctcttgttctct 314  Q
    |||||| || ||||||||||| ||||| ||| ||||||||||||||    
T  10670105 aaacatcagggcttcaaggcaggatttattcgttctcttgttctct 10670060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 196 - 323
Target Start/End: Original strand, 9070895 - 9071025
Alignment:
Q  196 aatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagat 293  Q
    |||| ||| |||||||||||||| | |||||  ||||||||||||| | |||||  ||||||||||  ||| ||||| ||| |||||||||||||| |||    
T  9070895 aatccttttctataaatagagacccttgcacttattattattcattcaaaacaccgacggttcaaggaaaatgtcaagcatcagagcttcaaggcatgat 9070994  T
Q  294 ttcttccttctcttgttctctc-aaggtatg 323  Q
    |||||||||||||| ||||||| ||||||||    
T  9070995 ttcttccttctcttcttctctctaaggtatg 9071025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 248 - 310
Target Start/End: Complemental strand, 26839779 - 26839717
Alignment:
Q  248 taacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgtt 310  Q
    |||||||||||| ||| |||||| ||| |||||||||||||| ||||||||| ||||||||||    
T  26839779 taacggttcaaggcaagggtcaagcatcagagcttcaaggcaggatttcttcattctcttgtt 26839717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 3400295 - 3400375
Alignment:
Q  198 tcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtcaaacatta 276  Q
    |||| |||||||||||||||||| |||||  ||| ||||||||||||||  ||||||||||||| | | |||||| |||||    
T  3400295 tcatatgctataaatagagactcttgcacgcattcttattcatttagaaatctaacggttcaaggcgagggtcaagcatta 3400375  T

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Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 163 - 315
Target Start/End: Complemental strand, 47024427 - 47024273
Alignment:
Q  163 aaaagactagttctcttctcctacatcctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaaga 260  Q
    ||||| |||| | |||||||||||| ||||   ||| |||| |||||||||||||| | |||||  |||||||||||||||||||| | |||||||||||    
T  47024427 aaaagtctagatttcttctcctacaccctaattaattattttctataaatagagacccttgcactaattattattcatttagaacattgacggttcaaga 47024328  T
Q  261 caaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 315  Q
    ||| |||||| ||| | ||| ||||||||||||||||||||||||||||||||||    
T  47024327 caagggtcaagcatcaaagcctcaaggcaagatttcttccttctcttgttctctc 47024273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 189 - 315
Target Start/End: Complemental strand, 17024577 - 17024449
Alignment:
Q  189 cctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaag 286  Q
    |||||| |||||||  |||||||||||||| | | |||  ||||||||||||| |||||| | |||||||||| ||| |||||| |||  ||||| ||||    
T  17024577 cctacctaatcattcactataaatagagacccttacactcattattattcattcagaacattgacggttcaaggcaagggtcaagcatcggagctccaag 17024478  T
Q  287 gcaagatttcttccttctcttgttctctc 315  Q
    ||||||||||||| |||||||||||||||    
T  17024477 gcaagatttcttctttctcttgttctctc 17024449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 176 - 315
Target Start/End: Complemental strand, 10451145 - 10451002
Alignment:
Q  176 tcttctcctacatcctacccaatcatttgctataaatagagactcgtg--cacattattattcatttag-aacac-taacggttcaagacaaa-ggtcaa 270  Q
    |||||||||| | ||||||||||||||| |||||||| ||||||| ||  | |||||||||||||| || ||||| | ||||||  || |||| ||||||    
T  10451145 tcttctcctaaaccctacccaatcattttctataaattgagactcttgctctcattattattcattcagaaacacttgacggttggaggcaaagggtcaa 10451046  T
Q  271 acattagagcttcaaggcaagatttcttccttctcttgttctctc 315  Q
    |||| |||||||||||||| || ||||||||||| ||||||||||    
T  10451045 acatcagagcttcaaggcagga-ttcttccttcttttgttctctc 10451002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 255 - 315
Target Start/End: Complemental strand, 12806539 - 12806479
Alignment:
Q  255 tcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 315  Q
    |||||| ||||||||||||| ||||||||||| ||| ||||||||||| | ||||||||||    
T  12806539 tcaagaaaaaggtcaaacatcagagcttcaagacaatatttcttccttttgttgttctctc 12806479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 176 - 270
Target Start/End: Complemental strand, 10319890 - 10319794
Alignment:
Q  176 tcttctcctacatcctacccaatcatttgctataaatagagactcgtgca--cattattattcatttagaacactaacggttcaagacaaaggtcaa 270  Q
    |||||||||| | |||||| |||||||||||||||||||||||   || |  ||||||| |||||  ||||||||||||||| ||| ||| ||||||    
T  10319890 tcttctcctaaaccctacctaatcatttgctataaatagagacatttgaattcattatttttcatccagaacactaacggttgaaggcaagggtcaa 10319794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 196 - 315
Target Start/End: Original strand, 15192700 - 15192820
Alignment:
Q  196 aatcatttgctataaatagagactcgtgcac--attattattcatttagaa-cactaacggttcaagacaaaggtcaaacattagagcttcaaggcaaga 292  Q
    |||||||| ||||||||||||| || || ||  ||||||||||||| |||| || | ||| | |||| ||| |||||| |||||||||||||||| |||     
T  15192700 aatcattttctataaatagagattcttgtacccattattattcattcagaaacattgacgat-caaggcaagggtcaagcattagagcttcaagg-aagg 15192797  T
Q  293 tttcttccttctcttgttctctc 315  Q
     |||||| |||||||||||||||    
T  15192798 attcttcgttctcttgttctctc 15192820  T

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Target: chr5 (Bit Score: 64; Significance: 7e-28; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 171 - 307
Target Start/End: Complemental strand, 26329723 - 26329585
Alignment:
Q  171 agttctcttctcctacatcctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtc 268  Q
    |||| |||||||||| | ||||||||||| |||||||||||||||  | | |||||  |||||| | ||| ||||||||||| |||||||| ||| ||||    
T  26329723 agttttcttctcctaaaccctacccaatcgtttgctataaatagatgcccttgcactcattattttccatatagaacactaatggttcaaggcaagggtc 26329624  T
Q  269 aaacattagagcttcaaggcaagatttcttccttctctt 307  Q
    || |||||||||||||||||| |||||||||||||||||    
T  26329623 aagcattagagcttcaaggcaggatttcttccttctctt 26329585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 315
Target Start/End: Complemental strand, 12265217 - 12265126
Alignment:
Q  224 cacattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 315  Q
    |||| ||||||||||||||||  | | |||||||||  || |||||| ||| |||| ||||||| | |||||||||||||||||||||||||    
T  12265217 cacaatattattcatttagaaagccagcggttcaaggtaatggtcaagcatcagagtttcaaggtaggatttcttccttctcttgttctctc 12265126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 224 - 314
Target Start/End: Original strand, 20715083 - 20715172
Alignment:
Q  224 cacattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctct 314  Q
    ||||| || |||||||||||||| | | |||| ||||||| |||||| ||| |||||||||  |||||| |||||||||||||||||||||    
T  20715083 cacataataattcatttagaacattgatggttaaagacaagggtcaagcatcagagcttcagagcaaga-ttcttccttctcttgttctct 20715172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 17028776 - 17028857
Alignment:
Q  234 ttcatttag-aacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctct 314  Q
    ||||||||| |||| |||| ||||||| ||| |||||||||| |||||||||| |||  |||||||||||  ||||||||||    
T  17028776 ttcatttagtaacattaacagttcaaggcaagggtcaaacatcagagcttcaatgcagtatttcttccttaccttgttctct 17028857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 289
Target Start/End: Original strand, 25681066 - 25681161
Alignment:
Q  196 aatcatttgctataaatagagactcgtg--cacattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggca 289  Q
    ||||||||||||||||||||||| | ||  |||||||||| | ||| ||||  |||  |||||||| ||| |||||| |||||| | |||||||||    
T  25681066 aatcatttgctataaatagagacacttgcacacattattaattattcagaaagctagtggttcaaggcaagggtcaagcattagggtttcaaggca 25681161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 315
Target Start/End: Complemental strand, 5398 - 5257
Alignment:
Q  176 tcttctcctacatcctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtcaaaca 273  Q
    |||||||||| | |||||| | | |||  |||||||||||||| | |||||  ||||||||||||| |||||||| |||||||||| ||| |||||| ||    
T  5398 tcttctcctaaaacctacctagttattatctataaatagagacccttgcactcattattattcattaagaacactgacggttcaaggcaagggtcaagca 5299  T
Q  274 ttagagcttcaaggcaagatttcttccttctcttgttctctc 315  Q
    | |||||||||||||| ||||||||| |||||||||||||||    
T  5298 tcagagcttcaaggcaggatttcttcattctcttgttctctc 5257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 177 - 314
Target Start/End: Original strand, 13911745 - 13911884
Alignment:
Q  177 cttctcctacatcctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtcaaacat 274  Q
    ||||||| | ||||||||||||||||| |||||||||||||| | |||||  ||||||||| ||| || ||||| || ||||||| ||| ||||||  ||    
T  13911745 cttctccaaaatcctacccaatcattttctataaatagagacccttgcactcattattattgattgaggacactgacagttcaaggcaagggtcaagtat 13911844  T
Q  275 tagagcttcaaggcaagatttcttccttctcttgttctct 314  Q
     | |||||||||||| ||||| ||||||||||||||||||    
T  13911845 catagcttcaaggcatgattttttccttctcttgttctct 13911884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 205 - 289
Target Start/End: Original strand, 33578234 - 33578320
Alignment:
Q  205 ctataaatagagactcgtgcacat--tattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggca 289  Q
    |||||||||||||| | ||||||   | ||||||||||||||  ||| ||||||||| ||| |||||||||||||||||||||||||    
T  33578234 ctataaatagagacacttgcacacacttttattcatttagaaagctagcggttcaaggcaatggtcaaacattagagcttcaaggca 33578320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 312
Target Start/End: Complemental strand, 33914186 - 33914126
Alignment:
Q  252 ggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttct 312  Q
    |||||||| |||||||||||||| |||| |||| | ||| |||||||||| ||||||||||    
T  33914186 ggttcaaggcaaaggtcaaacatcagagtttcatgacaaaatttcttcctcctcttgttct 33914126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 289
Target Start/End: Complemental strand, 19218839 - 19218745
Alignment:
Q  196 aatcatttgctataaatagagactcgtg--cacattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggca 289  Q
    |||||| | |||||||||||||| | ||  |||||| ||||||||| | ||  ||||||||||||||||| |||||| ||| |||| |||||||||    
T  19218839 aatcatattctataaatagagacccttgtacacattcttattcattaataaagctaacggttcaagacaagggtcaagcatcagag-ttcaaggca 19218745  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 171 - 315
Target Start/End: Original strand, 26657936 - 26658082
Alignment:
Q  171 agttctcttctcctacatcctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtc 268  Q
    |||| |||||||||| | |||||||||||||||| |||||||||| || |  ||||  |||||| || ||| ||||||||  | ||||||| ||| ||||    
T  26657936 agttttcttctcctaaaccctacccaatcatttgttataaatagataccctagcactcattattttttattcagaacactggcagttcaaggcaagggtc 26658035  T
Q  269 aaacattagagcttcaaggcaagatttcttccttctcttgttctctc 315  Q
    || ||| |||||||||||| | ||||||||| |||||||||||||||    
T  26658036 aagcatcagagcttcaaggaatgatttcttcattctcttgttctctc 26658082  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 203 - 314
Target Start/End: Complemental strand, 23519370 - 23519259
Alignment:
Q  203 tgctataaatagagactcgtgcaca--ttattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttcc 300  Q
    |||||||||||||||| | ||||||  ||||  ||||||||||||| | ||||| | || ||| ||||||||||||||||||||| | | |||| |||||    
T  23519370 tgctataaatagagacccttgcacacattatagttcatttagaacattgacggt-ctaggcaagggtcaaacattagagcttcaacgtaggatt-cttcc 23519273  T
Q  301 ttctcttgttctct 314  Q
    ||||||||||||||    
T  23519272 ttctcttgttctct 23519259  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 200 - 314
Target Start/End: Original strand, 12810635 - 12810751
Alignment:
Q  200 atttgctataaatagagactcgtgcacat--tattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttct 297  Q
    |||| ||||||||||| |||| |||||||  ||||||||||| |||||||| ||  ||||||  || |||||||  | | |||||||||||| |||||      
T  12810635 attttctataaatagaaactcttgcacatattattattcattcagaacactgacaattcaaggaaagggtcaaaactcaaagcttcaaggcaggattttg 12810734  T
Q  298 tccttctcttgttctct 314  Q
    || ||||||||||||||    
T  12810735 tcattctcttgttctct 12810751  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 34533099 - 34533163
Alignment:
Q  196 aatcatttgctataaatagagactcgtgcaca--ttattattcatttagaacactaacggttcaa 258  Q
    |||||| || ||||||||||||||| ||||||  || |||||||||||||| |||||| ||||||    
T  34533099 aatcatatgatataaatagagactcttgcacacattcttattcatttagaaaactaacagttcaa 34533163  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 226 - 315
Target Start/End: Complemental strand, 22892851 - 22892762
Alignment:
Q  226 cattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 315  Q
    ||||||| |||||| |||||||  |||||||||| ||| |||||| ||| |||| ||||||| | |||||||||||||||||||||||||    
T  22892851 cattatttttcattcagaacacggacggttcaaggcaagggtcaagcatcagagtttcaaggaaggatttcttccttctcttgttctctc 22892762  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 226 - 315
Target Start/End: Complemental strand, 11309903 - 11309814
Alignment:
Q  226 cattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 315  Q
    |||||||||||||| ||||||||    | ||||||||| |||||||||| ||||||||||| |||| | ||||||| |||||||||||||    
T  11309903 cattattattcattcagaacactggaagatcaagacaatggtcaaacatcagagcttcaagacaagttatcttcctcctcttgttctctc 11309814  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 312
Target Start/End: Original strand, 32239765 - 32239853
Alignment:
Q  224 cacattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttct 312  Q
    |||||||||||| ||| ||||  ||| ||||||||  ||||||||||||||||||| |  ||||||||||||| |||| ||||||||||    
T  32239765 cacattattatttattcagaaagctagcggttcaatgcaaaggtcaaacattagagttcaaaggcaagatttcatcctcctcttgttct 32239853  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 315
Target Start/End: Complemental strand, 28900962 - 28900845
Alignment:
Q  200 atttgctataaatagagactcgtgcac--attattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttct 297  Q
    |||| ||||||||||||||   |||||  ||||||||   ||||||||||| ||| |||||  |||| || | |||| |||||||||||| | |||||||    
T  28900962 attttctataaatagagaccattgcactcattattatggctttagaacactgacgcttcaaagcaaaagttagacatcagagcttcaaggtaggatttct 28900863  T
Q  298 tccttctcttgttctctc 315  Q
    |||||||  |||||||||    
T  28900862 tccttcttgtgttctctc 28900845  T

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Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 224 - 314
Target Start/End: Complemental strand, 17860094 - 17860003
Alignment:
Q  224 cacattattattcatt-tagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctct 314  Q
    |||||||||||||||| |  |||| | |||||||||  ||| |||||||||| |||||||||||||| |||||||||||||||| |||||||    
T  17860094 cacattattattcattcttaaacattgacggttcaatgcaagggtcaaacatcagagcttcaaggcatgatttcttccttctctggttctct 17860003  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 315
Target Start/End: Complemental strand, 30235981 - 30235890
Alignment:
Q  224 cacattattattcatttagaacactaacggttcaagacaaaggtcaaacattagagcttcaaggcaagatttcttccttctcttgttctctc 315  Q
    ||||||||| || ||| |||| |||| |||||||||| || |||||||||| |||| || |||| | ||||||||||| |||||||||||||    
T  30235981 cacattattttttattcagaaaactagcggttcaagaaaagggtcaaacatcagagttttaaggtaggatttcttcctcctcttgttctctc 30235890  T

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Target: scaffold0282 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 176 - 315
Target Start/End: Complemental strand, 22281 - 22140
Alignment:
Q  176 tcttctcctacatcctacccaatcatttgctataaatagagactcgtgcac--attattattcatttagaa-cactaacggttcaagacaaaggtcaaac 272  Q
    |||||||||| |||||||||||||||||| | ||| ||||||| | ||| |  |||||| |||||| |||| |||||  | ||||||  | ||||||| |    
T  22281 tcttctcctaaatcctacccaatcatttgatttaactagagacccttgctctcattatttttcattcagaaacactatag-ttcaaggaataggtcaagc 22183  T
Q  273 attagagcttcaaggcaagatttcttccttctcttgttctctc 315  Q
    || |  ||||||||||| ||||||||||||||||| |||||||    
T  22182 atcatcgcttcaaggcaggatttcttccttctcttattctctc 22140  T

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