View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_384 (Length: 217)

Name: NF8810A_low_384
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_384
NF8810A_low_384
[»] chr8 (4 HSPs)
chr8 (15-157)||(756970-757114)
chr8 (1-156)||(23255764-23255921)
chr8 (99-157)||(16667175-16667233)
chr8 (111-153)||(26674764-26674806)
[»] chr3 (6 HSPs)
chr3 (58-157)||(6160013-6160112)
chr3 (8-156)||(48095704-48095854)
chr3 (8-156)||(52969934-52970084)
chr3 (1-114)||(26755851-26755966)
chr3 (155-198)||(48095147-48095190)
chr3 (155-198)||(52970584-52970627)
[»] chr7 (5 HSPs)
chr7 (1-157)||(15893010-15893168)
chr7 (1-156)||(19219638-19219795)
chr7 (36-156)||(41254950-41255072)
chr7 (160-198)||(41255610-41255648)
chr7 (19-148)||(44711932-44712060)
[»] chr5 (9 HSPs)
chr5 (17-157)||(16491687-16491829)
chr5 (8-156)||(23350937-23351087)
chr5 (1-156)||(25762745-25762901)
chr5 (58-156)||(20234157-20234255)
chr5 (8-156)||(34828117-34828267)
chr5 (155-198)||(34830903-34830946)
chr5 (111-153)||(31058672-31058714)
chr5 (155-198)||(25762181-25762224)
chr5 (111-153)||(31043446-31043488)
[»] chr1 (8 HSPs)
chr1 (1-156)||(33804342-33804498)
chr1 (1-156)||(44710573-44710730)
chr1 (1-156)||(45908324-45908481)
chr1 (1-156)||(50517394-50517552)
chr1 (18-153)||(12865284-12865421)
chr1 (155-198)||(44711233-44711276)
chr1 (155-198)||(33803777-33803820)
chr1 (155-198)||(45908991-45909034)
[»] chr2 (4 HSPs)
chr2 (1-157)||(30214504-30214662)
chr2 (155-198)||(29810362-29810405)
chr2 (162-198)||(30213941-30213977)
chr2 (117-156)||(17310076-17310115)


Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 15 - 157
Target Start/End: Complemental strand, 757114 - 756970
Alignment:
Q  15 tgtaacctttttaataaagccatgcatccaaattgagatt-ggt-tttgtatggtatgtcgactttaacgggtgttggcatcttcagattttttggagtt 112  Q
    ||||||||||| ||||||| ||||||||||||||| |||| ||| ||||| |||||||||||||||||||||||||||||||||  ||||||||||||||    
T  757114 tgtaaccttttcaataaagtcatgcatccaaattgggatttggtctttgtgtggtatgtcgactttaacgggtgttggcatctttggattttttggagtt 757015  T
Q  113 ggcttaggaggagtaagagacatgttgcttttccgtgcactcttt 157  Q
    ||||||||||||||| ||||||||||| ||||| |||||||||||    
T  757014 ggcttaggaggagtaggagacatgttgtttttctgtgcactcttt 756970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 23255921 - 23255764
Alignment:
Q  1 tcaccgagtacatatgtaacctttttaataaagccatgcatccaaattgagatt-ggt-tttgtatggtatgtcgactttaacgggtgttggcatcttca 98  Q
    |||||| |||||| ||||||||||| ||||||   | |||||||||| | |||| ||| |||||  ||||||| ||||||||| ||||||||| | |||     
T  23255921 tcaccgggtacatctgtaaccttttcaataaatttaggcatccaaatcgggatttggtctttgtgcggtatgttgactttaaccggtgttggcttgttcg 23255822  T
Q  99 gattttttggagttggcttaggaggagtaagagacatgttgcttttccgtgcactctt 156  Q
    ||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||    
T  23255821 gattttttggagttggcttaggaggagtaggtgacatgttgctttttcgtgcactctt 23255764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 16667233 - 16667175
Alignment:
Q  99 gattttttggagttggcttaggaggagtaagagacatgttgcttttccgtgcactcttt 157  Q
    ||||||| ||| ||||||||||| || || |||||||||||||||||||||||||||||    
T  16667233 gatttttcggaattggcttaggaagattaggagacatgttgcttttccgtgcactcttt 16667175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 153
Target Start/End: Original strand, 26674764 - 26674806
Alignment:
Q  111 ttggcttaggaggagtaagagacatgttgcttttccgtgcact 153  Q
    |||||||||||||| || |||||||||||||||||||| ||||    
T  26674764 ttggcttaggaggattaggagacatgttgcttttccgtacact 26674806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 58 - 157
Target Start/End: Original strand, 6160013 - 6160112
Alignment:
Q  58 tttgtatggtatgtcgactttaacgggtgttggcatcttcagattttttggagttggcttaggaggagtaagagacatgttgcttttccgtgcactcttt 157  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  6160013 tttgtgtggtatgtcgactttaacgggtgttggcatcttcggattttttggagttggcttaggaggagtaggagacatgttgcttttccgtgcactcttt 6160112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 156
Target Start/End: Complemental strand, 48095854 - 48095704
Alignment:
Q  8 gtacatatgtaacctttttaataaagccatgcatccaaattgagatt-ggt-tttgtatggtatgtcgactttaacgggtgttggcatcttcagattttt 105  Q
    |||||| ||||||||||| ||||||   |||||||||||||  |||| ||| ||||| || ||| | ||||||||| ||||||||| | ||  | |||||    
T  48095854 gtacatctgtaaccttttcaataaacttatgcatccaaattaggatttggtctttgtgtgatatattgactttaaccggtgttggcttgttagggttttt 48095755  T
Q  106 tggagttggcttaggaggagtaagagacatgttgcttttccgtgcactctt 156  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  48095754 tggagttggcttaggaggagtaggtgacatgttgcttttccgtgcactctt 48095704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 52969934 - 52970084
Alignment:
Q  8 gtacatatgtaacctttttaataaagccatgcatccaaattgagatt-ggt-tttgtatggtatgtcgactttaacgggtgttggcatcttcagattttt 105  Q
    |||||| ||||||||||| ||||||   |||||||||||||| |||| ||| ||||| |||||||| ||||||||| |||||| || | ||| | |||||    
T  52969934 gtacatctgtaaccttttcaataaatttatgcatccaaattgggatttggtctttgtgtggtatgttgactttaaccggtgttagcttgttcgggttttt 52970033  T
Q  106 tggagttggcttaggaggagtaagagacatgttgcttttccgtgcactctt 156  Q
    |||||||| ||||| ||||||| | ||||||||||||||| ||||||||||    
T  52970034 tggagttgacttagtaggagtaggtgacatgttgcttttctgtgcactctt 52970084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 26755851 - 26755966
Alignment:
Q  1 tcaccgagtacatatgtaacctttttaataaagccatgcatccaaattgagatt-ggt-tttgtatggtatgtcgactttaacgggtgttggcatcttca 98  Q
    |||||| |||||| ||||||||||| |||||||   ||||||||||||| |||| ||| ||||| |||||||| ||||||||||||||||||| |||||     
T  26755851 tcaccgggtacatctgtaaccttttcaataaagtattgcatccaaattgggatttggtctttgtgtggtatgtggactttaacgggtgttggcttcttcg 26755950  T
Q  99 gattttttggagttgg 114  Q
    ||||||||||| ||||    
T  26755951 gattttttggaattgg 26755966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 48095190 - 48095147
Alignment:
Q  155 tttttaaaaaattacctgaagaatatctcattctggcaatagag 198  Q
    ||||||||||||||| ||||||||||| |||| |||||||||||    
T  48095190 tttttaaaaaattacttgaagaatatcccattatggcaatagag 48095147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 52970584 - 52970627
Alignment:
Q  155 tttttaaaaaattacctgaagaatatctcattctggcaatagag 198  Q
    ||||| |||||| |||||||||||||| ||||||||||||||||    
T  52970584 ttttttaaaaatcacctgaagaatatcccattctggcaatagag 52970627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 15893168 - 15893010
Alignment:
Q  1 tcaccgagtacatatgtaacctttttaataaagccatgcatccaaattgagatt-ggt-tttgtatggtatgtcgactttaacgggtgttggcatcttca 98  Q
    |||||| |||||| ||||||||||| ||||||| ||||||| ||||||| |||| ||| ||||| |||||||| ||||||||| |||||| || |||||     
T  15893168 tcaccgggtacatctgtaaccttttgaataaagtcatgcattcaaattgggatttggtctttgtgtggtatgtggactttaacaggtgtttgcttcttcg 15893069  T
Q  99 gattttttggagttggcttaggaggagtaagagacatgttgcttttccgtgcactcttt 157  Q
    ||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||    
T  15893068 gattttttggaattggcttaggagaagtaggagacatgttgcttttccgtgcactcttt 15893010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 19219795 - 19219638
Alignment:
Q  1 tcaccgagtacatatgtaacctttttaataaagccatgcatccaaattgagatt-ggt-tttgtatggtatgtcgactttaacgggtgttggcatcttca 98  Q
    ||||||||||||| | ||||||||| ||||||   |||||||||||||||  || ||| ||||| |||||||| ||||||||  ||||||||| | |||     
T  19219795 tcaccgagtacatctataaccttttcaataaatttatgcatccaaattgaactttggtctttgtgtggtatgttgactttaaacggtgttggcttgttcg 19219696  T
Q  99 gattttttggagttggcttaggaggagtaagagacatgttgcttttccgtgcactctt 156  Q
    | |||||||||||||||||||||| |||| | ||||||||||||||||||||||||||    
T  19219695 ggttttttggagttggcttaggagaagtaggtgacatgttgcttttccgtgcactctt 19219638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 41254950 - 41255072
Alignment:
Q  36 atgcatccaaattgagatt-ggt-tttgtatggtatgtcgactttaacgggtgttggcatcttcagattttttggagttggcttaggaggagtaagagac 133  Q
    |||||||||||||| |||| ||| ||||| |||||| | ||||||||| ||||||||| | ||||  |||||||||||||||||||||||||||   |||    
T  41254950 atgcatccaaattgggatttggtctttgtgtggtatattgactttaaccggtgttggcttgttcatgttttttggagttggcttaggaggagtagttgac 41255049  T
Q  134 atgttgcttttccgtgcactctt 156  Q
    |||||||||||||||||||||||    
T  41255050 atgttgcttttccgtgcactctt 41255072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 198
Target Start/End: Original strand, 41255610 - 41255648
Alignment:
Q  160 aaaaaattacctgaagaatatctcattctggcaatagag 198  Q
    |||||||||||||||||||||| |||| |||||||||||    
T  41255610 aaaaaattacctgaagaatatcccattatggcaatagag 41255648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 44712060 - 44711932
Alignment:
Q  19 acctttttaataaagccatgcatccaaatt-gagattggt-tttgtatggtatgtcgactttaacgggtgttggcatcttcagattttttggagttggct 116  Q
    ||||||| ||||||| |||||||||||||| ||  ||||| ||||| |||||||||||||||||| |   |||     ||  ||||||| ||| ||||||    
T  44712060 accttttcaataaagtcatgcatccaaattggaatttggtctttgtgtggtatgtcgactttaaccgaaattg---agttaggatttttgggatttggct 44711964  T
Q  117 taggaggagtaagagacatgttgcttttccgt 148  Q
    ||| |||| || ||||||||||||||||||||    
T  44711963 tagaaggattaggagacatgttgcttttccgt 44711932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 4e-37; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 17 - 157
Target Start/End: Original strand, 16491687 - 16491829
Alignment:
Q  17 taacctttttaataaagccatgcatccaaattgagatt-ggt-tttgtatggtatgtcgactttaacgggtgttggcatcttcagattttttggagttgg 114  Q
    ||||||||| ||||||| ||||||||||||||| |||| ||| ||||| |||||| | ||||||||||||||||| | ||||| ||||||| ||| ||||    
T  16491687 taaccttttcaataaagtcatgcatccaaattgggatttggtctttgtgtggtatatagactttaacgggtgttgacttcttcggatttttgggaattgg 16491786  T
Q  115 cttaggaggagtaagagacatgttgcttttccgtgcactcttt 157  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  16491787 cttaggaggagtatgagacatgttgcttttccgtgcactcttt 16491829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 23350937 - 23351087
Alignment:
Q  8 gtacatatgtaacctttttaataaagccatgcatccaaattgagatt-ggt-tttgtatggtatgtcgactttaacgggtgttggcatcttcagattttt 105  Q
    |||||| ||||||||||| ||||||   ||||||||||||||||||| ||| ||| | || ||||| ||||||||| | ||||||| | ||| | |||||    
T  23350937 gtacatctgtaaccttttcaataaatttatgcatccaaattgagatttggtctttatgtgatatgttgactttaaccgatgttggcttgttcgggttttt 23351036  T
Q  106 tggagttggcttaggaggagtaagagacatgttgcttttccgtgcactctt 156  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  23351037 tggagttggcttaggaggagtaggtgacatgttgcttttccgtgcactctt 23351087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 25762901 - 25762745
Alignment:
Q  1 tcaccgagtacatatgtaacctttttaataaagccatgcatccaaattgagatt-ggt-tttgtatggtatgtcgactttaacgggtgttggcatcttca 98  Q
    |||||| |||||| ||||||||||| |||||||  |||||||||||||| |||| ||| ||||| | |||||| ||||||| ||| ||||||| | |||     
T  25762901 tcaccgggtacatctgtaaccttttcaataaagttatgcatccaaattgggatttggtctttgtgttgtatgttgactttaccgg-tgttggcttgttcg 25762803  T
Q  99 gattttttggagttggcttaggaggagtaagagacatgttgcttttccgtgcactctt 156  Q
      ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  25762802 agttttttggagttggcttaggaggagtaggtgacatgttgcttttccgtgcactctt 25762745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 58 - 156
Target Start/End: Original strand, 20234157 - 20234255
Alignment:
Q  58 tttgtatggtatgtcgactttaacgggtgttggcatcttcagattttttggagttggcttaggaggagtaagagacatgttgcttttccgtgcactctt 156  Q
    ||||| |||||||| ||||||||| ||||||||| | ||| | |||||||||||| |||||||||||| | | ||||||||||||||||||||||||||    
T  20234157 tttgtgtggtatgttgactttaaccggtgttggcttgttcgggttttttggagttagcttaggaggagcaggtgacatgttgcttttccgtgcactctt 20234255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 34828117 - 34828267
Alignment:
Q  8 gtacatatgtaacctttttaataaagccatgcatccaaattgagatt-ggt-tttgtatggtatgtcgactttaacgggtgttggcatcttcagattttt 105  Q
    |||||| ||||||||||| ||||||   ||||||| |||||| |||| ||| ||||| |||||||| || |||||  ||||||||| | ||| | |||||    
T  34828117 gtacatctgtaaccttttcaataaatttatgcatcaaaattgggatttggtctttgtgtggtatgttgaatttaatcggtgttggcttgttcgggttttt 34828216  T
Q  106 tggagttggcttaggaggagtaagagacatgttgcttttccgtgcactctt 156  Q
    ||||||||||||||||  |||| | ||||||||||||||||||||||||||    
T  34828217 tggagttggcttaggaaaagtaggtgacatgttgcttttccgtgcactctt 34828267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 34830903 - 34830946
Alignment:
Q  155 tttttaaaaaattacctgaagaatatctcattctggcaatagag 198  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  34830903 tttttaaaaaattacctgaagaatatcccattctggcaatagag 34830946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 153
Target Start/End: Original strand, 31058672 - 31058714
Alignment:
Q  111 ttggcttaggaggagtaagagacatgttgcttttccgtgcact 153  Q
    |||||||||||||| || |||||||||||||||||||||||||    
T  31058672 ttggcttaggaggattaggagacatgttgcttttccgtgcact 31058714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 25762224 - 25762181
Alignment:
Q  155 tttttaaaaaattacctgaagaatatctcattctggcaatagag 198  Q
    ||||| ||||||||||||||||||||| |||||||| |||||||    
T  25762224 ttttttaaaaattacctgaagaatatcccattctggtaatagag 25762181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 153
Target Start/End: Original strand, 31043446 - 31043488
Alignment:
Q  111 ttggcttaggaggagtaagagacatgttgcttttccgtgcact 153  Q
    |||||||||||||| ||  ||||||||||||||||||||||||    
T  31043446 ttggcttaggaggattataagacatgttgcttttccgtgcact 31043488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 1e-27; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 33804498 - 33804342
Alignment:
Q  1 tcaccgagtacatatgtaacctttttaataaagccatgcatccaaattgagattgg--ttttgtatggtatgtcgactttaacgggtgttggcatcttca 98  Q
    |||||| |||||| ||||||||||| ||||||   |||||||||||||| |||| |  |||||| ||||||||  |||||||| ||||||||| | |||     
T  33804498 tcaccgggtacatttgtaaccttttcaataaatttatgcatccaaattgggatttggtttttgtgtggtatgttaactttaaccggtgttggcttgttcg 33804399  T
Q  99 gattttttggagttggcttaggaggagtaagagacatgttgcttttccgtgcactctt 156  Q
    | ||||| ||||||||||||||||||||| | |||||||||||||| |||||||||||    
T  33804398 ggttttt-ggagttggcttaggaggagtaggtgacatgttgctttttcgtgcactctt 33804342  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 44710573 - 44710730
Alignment:
Q  1 tcaccgagtacatatgtaacctttttaataaagccatgcatccaaattgagatt-ggt-tttgtatggtatgtcgactttaacgggtgttggcatcttca 98  Q
    |||||| |||||| ||||||||||| ||||||   |||||||||||||  |||| ||| ||||| |||||| |  |||||||| ||||||||| | |||     
T  44710573 tcaccgggtacatctgtaaccttttcaataaatttatgcatccaaattaggatttggtctttgtgtggtatattaactttaaccggtgttggcttgttcg 44710672  T
Q  99 gattttttggagttggcttaggaggagtaagagacatgttgcttttccgtgcactctt 156  Q
    | ||||||||||||||||||||||||||| | |||||||||||||||| |||||||||    
T  44710673 ggttttttggagttggcttaggaggagtaggtgacatgttgcttttccatgcactctt 44710730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 45908324 - 45908481
Alignment:
Q  1 tcaccgagtacatatgtaacctttttaataaagccatgcatccaaattgagatt-ggt-tttgtatggtatgtcgactttaacgggtgttggcatcttca 98  Q
    |||||| |||||| ||||||||||| ||||||   |||||||||||||| |||| ||| ||||| |||||| | ||||||||| ||||||||| | | |     
T  45908324 tcaccgggtacatctgtaaccttttcaataaatttatgcatccaaattgggatttggtctttgtgtggtatattgactttaaccggtgttggcttgtccg 45908423  T
Q  99 gattttttggagttggcttaggaggagtaagagacatgttgcttttccgtgcactctt 156  Q
    | ||||||||||||||||||||| ||||| | |||||||||||||| |||||||||||    
T  45908424 ggttttttggagttggcttaggaagagtaggtgacatgttgctttttcgtgcactctt 45908481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 50517552 - 50517394
Alignment:
Q  1 tcaccgagtacatatgtaacctttttaataaagccatgcatccaaattgagatt-ggt-tttgtatggtatgtcgactttaa-cgggtgttggcatcttc 97  Q
    |||||| |||||| |||| |||||| ||||||   |||||| ||||||| |||| ||| ||||| | |||| |  ||||||| ||||||||||| | |||    
T  50517552 tcaccgggtacatctgtacccttttcaataaatttatgcattcaaattgggatttggtctttgtgtcgtatatttactttaatcgggtgttggcttgttc 50517453  T
Q  98 agattttttggagttggcttaggaggagtaagagacatgttgcttttccgtgcactctt 156  Q
     | ||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||    
T  50517452 gggttttttggagttggcttaggacgagtaggtgacatgttgcttttccgtgcactctt 50517394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 12865284 - 12865421
Alignment:
Q  18 aacctttttaataaagccatgcatccaaattgagatt-ggt-tttgtatggtatgtcgactttaacgggtgttggcatcttcagattttttggagttggc 115  Q
    ||||||| |||||||  ||||||||||||||| |||| ||| ||||| |||||||| |||||||||  ||| |||| ||||| ||||||||||| |||||    
T  12865284 aacctttctaataaattcatgcatccaaattgggatttggtctttgtgtggtatgtggactttaaccagtgctggcttcttcggattttttggaattggc 12865383  T
Q  116 ttaggaggagtaagagacatgttgcttttccgtgcact 153  Q
     || |||||||| |||||||||| ||||| | ||||||    
T  12865384 ataagaggagtaggagacatgtttctttttcatgcact 12865421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 44711233 - 44711276
Alignment:
Q  155 tttttaaaaaattacctgaagaatatctcattctggcaatagag 198  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  44711233 tttttaaaaaattacctgaagaatatcccattctggcaatagag 44711276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 33803820 - 33803777
Alignment:
Q  155 tttttaaaaaattacctgaagaatatctcattctggcaatagag 198  Q
    |||||||||||| ||||||||||||||||||||||| |||||||    
T  33803820 tttttaaaaaatcacctgaagaatatctcattctggaaatagag 33803777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 45908991 - 45909034
Alignment:
Q  155 tttttaaaaaattacctgaagaatatctcattctggcaatagag 198  Q
    |||| ||||||||||||||||||| || ||||||||||||||||    
T  45908991 ttttaaaaaaattacctgaagaatgtcccattctggcaatagag 45909034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 30214662 - 30214504
Alignment:
Q  1 tcaccgagtacatatgtaacctttttaataaagccatgcatccaaattgagatt-ggt-tttgtatggtatgtcgactttaacgggtgttggcatcttca 98  Q
    |||||| |||||| ||||||||||| ||||||   |||||||||||||| |||| ||| ||||| |||||| | ||||||||| ||||||||| | ||      
T  30214662 tcaccgggtacatctgtaaccttttcaataaatttatgcatccaaattgggatttggtctttgtgtggtatattgactttaaccggtgttggcttgttgg 30214563  T
Q  99 gattttttggagttggcttaggaggagtaagagacatgttgcttttccgtgcactcttt 157  Q
    | ||||||||||||| |||||||||||||   |||||||||||||| ||||||||||||    
T  30214562 ggttttttggagttgacttaggaggagtagatgacatgttgctttttcgtgcactcttt 30214504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 29810405 - 29810362
Alignment:
Q  155 tttttaaaaaattacctgaagaatatctcattctggcaatagag 198  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  29810405 tttttaaaaaatcacctgaagaatatctcattctggcaatagag 29810362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 30213977 - 30213941
Alignment:
Q  162 aaaattacctgaagaatatctcattctggcaatagag 198  Q
    ||||||||||||||||||||||||||||| |||||||    
T  30213977 aaaattacctgaagaatatctcattctggaaatagag 30213941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 117 - 156
Target Start/End: Original strand, 17310076 - 17310115
Alignment:
Q  117 taggaggagtaagagacatgttgcttttccgtgcactctt 156  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  17310076 taggaggagtacgtgacatgttgcttttccgtgcactctt 17310115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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