View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8810A_low_388 (Length: 216)
Name: NF8810A_low_388
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_388 |
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Alignment Details
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 26975517 - 26975725
Alignment:
| Q |
3 |
gacagaaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttg |
102 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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|
| T |
26975517 |
gacagaaatgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctttacatgttgctgattaccttgttg |
26975616 |
T |
|
| Q |
103 |
gactcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaa |
202 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26975617 |
gactcaaatctcgaatattaaaagtgaactcactactagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaa |
26975716 |
T |
|
| Q |
203 |
gacaacact |
211 |
Q |
| |
|
||||||||| |
|
|
| T |
26975717 |
gacaacact |
26975725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 3 - 207
Target Start/End: Original strand, 26636212 - 26636416
Alignment:
| Q |
3 |
gacagaaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttg |
102 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
26636212 |
gacagaaatgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattaccttgttg |
26636311 |
T |
|
| Q |
103 |
gactcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaa |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| || |
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|
| T |
26636312 |
gactcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaaccgaaggaatgggcaa |
26636411 |
T |
|
| Q |
203 |
gacaa |
207 |
Q |
| |
|
||||| |
|
|
| T |
26636412 |
gacaa |
26636416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 3 - 207
Target Start/End: Original strand, 26742178 - 26742382
Alignment:
| Q |
3 |
gacagaaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttg |
102 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
26742178 |
gacagaaatgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattaccttgttg |
26742277 |
T |
|
| Q |
103 |
gactcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaa |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||| || |
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|
| T |
26742278 |
gactcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaaccgaaggaatgggcaa |
26742377 |
T |
|
| Q |
203 |
gacaa |
207 |
Q |
| |
|
||||| |
|
|
| T |
26742378 |
gacaa |
26742382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 26950309 - 26950517
Alignment:
| Q |
3 |
gacagaaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttg |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26950309 |
gacagaaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattaccttgttg |
26950408 |
T |
|
| Q |
103 |
gactcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaa |
202 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||| ||||| || | |||||||||| ||| ||||||||||||||||||||||||||||| || |
|
|
| T |
26950409 |
gactcaaatctcgaatatcagaagtgaattcactttcagagttgggatcaaacgatggagtctgcatgataggaatccttggaactgggggaatgggaaa |
26950508 |
T |
|
| Q |
203 |
gacaacact |
211 |
Q |
| |
|
||||||||| |
|
|
| T |
26950509 |
gacaacact |
26950517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 3 - 211
Target Start/End: Original strand, 26959692 - 26959900
Alignment:
| Q |
3 |
gacagaaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttg |
102 |
Q |
| |
|
||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||| |||||| ||||||||||||||||||| |||| |
|
|
| T |
26959692 |
gacagaaatgagtatgaacgtgattttattgaaaaaatagttacagacgtctccaacaagattaaccatgttcctttacatgttgctgattaccttgttg |
26959791 |
T |
|
| Q |
103 |
gactcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaa |
202 |
Q |
| |
|
| |||||||||||||||||| ||||||| |||||| ||| ||||| || | |||||||||| ||| |||||||||||||||||||| |||||||| || |
|
|
| T |
26959792 |
gtctcaaatctcgaatatcaaaagtgaattcactttcagagttgggatcaaacgatggagtctgcatgataggaatccttggaactggaggaatgggaaa |
26959891 |
T |
|
| Q |
203 |
gacaacact |
211 |
Q |
| |
|
||||||||| |
|
|
| T |
26959892 |
gacaacact |
26959900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 3 - 211
Target Start/End: Complemental strand, 27664821 - 27664613
Alignment:
| Q |
3 |
gacagaaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttg |
102 |
Q |
| |
|
||||||||| |||||||| | | ||||||||| |||||||||||||||||||| |||||||||||| || | ||||||||||||| ||||| |||| |
|
|
| T |
27664821 |
gacagaaataaatatgaatacaaatttattgaagaaatagttacagacgtctccaacaagatcaaccgttgtcatttacatgttgctgagtaccttgttg |
27664722 |
T |
|
| Q |
103 |
gactcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaa |
202 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||| | ||| |||||||||| |||||||||||||||||||||||| || ||||||| |
|
|
| T |
27664721 |
gactcgaatctcgaatatcagaagtgaattcacttctagacttgggatgtaccgatggagtctacataataggaatccttggaactggaggtctgggtaa |
27664622 |
T |
|
| Q |
203 |
gacaacact |
211 |
Q |
| |
|
||||||||| |
|
|
| T |
27664621 |
gacaacact |
27664613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 4 - 211
Target Start/End: Original strand, 26849279 - 26849486
Alignment:
| Q |
4 |
acagaaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttgg |
103 |
Q |
| |
|
|||||||||||||||||| | ||||||||| |||||||||| || |||||| ||||||||||||| |||||| | ||||||||||||||||| ||||| |
|
|
| T |
26849279 |
acagaaatgaatatgaacaccattttattgggaaaatagttaaggatgtctccaacaagatcaaccatgttcctttgcatgttgctgattaccttgttgg |
26849378 |
T |
|
| Q |
104 |
actcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaag |
203 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||| |||| |||| ||||||||||| | ||||||||||||||||||||| |||||||| || |
|
|
| T |
26849379 |
acttaaatctcgaatatcagaagtgaattcacttctagaattggaatctaatgatggagtctggaaaataggaatccttggaactggaggaatgggaaaa |
26849478 |
T |
|
| Q |
204 |
acaacact |
211 |
Q |
| |
|
|||||||| |
|
|
| T |
26849479 |
acaacact |
26849486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 3 - 208
Target Start/End: Original strand, 25074436 - 25074638
Alignment:
| Q |
3 |
gacagaaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttg |
102 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| ||||| ||||| |||||||| |||||||||| |||| |
|
|
| T |
25074436 |
gacagaaatgaatatgaacgtgattttattgaaaaaatagttagagacgtctccaacaagattaaccaaattcctttacatgttactgattaccttgttg |
25074535 |
T |
|
| Q |
103 |
gactcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaa |
202 |
Q |
| |
|
| || ||||||||| ||||||||||| ||||||||||||||||| | || ||||||| | ||||||||||||| |||||||||| |||||||| || |
|
|
| T |
25074536 |
gtcttcgatctcgaatttcagaagtgaattcacttctagacttgggatata---atggagtatgcataataggaatcgttggaactggtggaatgggcaa |
25074632 |
T |
|
| Q |
203 |
gacaac |
208 |
Q |
| |
|
|||||| |
|
|
| T |
25074633 |
gacaac |
25074638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 31288871 - 31288986
Alignment:
| Q |
3 |
gacagaaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttg |
102 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| ||||| |||||| ||||||||||||||||||| |||| |
|
|
| T |
31288871 |
gacataaatgaatatgaacgagattttattgaaaaaatagttacagatgtctccaacaagattaaccatgttcctttacatgttgctgattaccttgttg |
31288970 |
T |
|
| Q |
103 |
gactcaaatctcgaat |
118 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
31288971 |
gtctcaaatctcgaat |
31288986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 211
Target Start/End: Original strand, 31288986 - 31289042
Alignment:
| Q |
155 |
tgatggagtcttcataataggaatccttggaactgggggaatgggtaagacaacact |
211 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||| |||| |||||| |||||||| |
|
|
| T |
31288986 |
tgatggagtctgcataataggaatacttggaactggaggaaggggtaaaacaacact |
31289042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 24716151 - 24716193
Alignment:
| Q |
3 |
gacagaaatgaatatgaacgcgattttattgaaaaaatagtta |
45 |
Q |
| |
|
|||||||||||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
24716151 |
gacagaaatgaacatgaaggcgatgttattgaaaaaatagtta |
24716193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 3 - 208
Target Start/End: Complemental strand, 17992831 - 17992626
Alignment:
| Q |
3 |
gacagaaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctagttg |
102 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| ||||||||||| |||||||||| |||||||| ||| |
|
|
| T |
17992831 |
gacagaaatgaatatgaacgtgattttattgaaaaaatagttacagacacttccaacaagattaaccacgttccattacatgttgccgattaccttattg |
17992732 |
T |
|
| Q |
103 |
gactcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgggtaa |
202 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||| | || |||||| |||| |||||||||||||||||| ||||| |||||||| || |
|
|
| T |
17992731 |
gtctcaaatctcgaatatcagaagtgaattcacttctagacttggaatataatgatggtgtctgcataataggaatccttggtactggtggaatgggcaa |
17992632 |
T |
|
| Q |
203 |
gacaac |
208 |
Q |
| |
|
|||||| |
|
|
| T |
17992631 |
gacaac |
17992626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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