View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_39 (Length: 401)
Name: NF8810A_low_39
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 33498982 - 33499377
Alignment:
| Q |
1 |
ataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaaccttctcttctctcgag |
100 |
Q |
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| T |
33498982 |
ataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaaccttctcttctcttgag |
33499081 |
T |
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| Q |
101 |
tagtgtgagtgcgaatagctcaattgaattgtgttgattttgcaggcaaaacaagcttcacttggcgcaaactcgatggaggaaacttacaagcaagcag |
200 |
Q |
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| T |
33499082 |
tagtgtgagagcgaatagctcaattgaattgtgttgattttgcaggcaaaacaagcttcacttggcgcaaactcgatggaggaaacttacaagcaagcag |
33499181 |
T |
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| Q |
201 |
ctttagaaattatgacgaggatcgcttaaaattttgatcataaaacttgtcttttcattccgtatgaattttattttcc-tcctatcggaaacagttaga |
299 |
Q |
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| T |
33499182 |
ctttagaaattatgacgaggatcgcttaaaattttgatcataaaacttgtcttttcattccgtatgaattttattttccttccgatcggaaacagttaga |
33499281 |
T |
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| Q |
300 |
attggccatctttgatggtcctatgagacattttatggtgtttaaactagttaaattatttgctttttgtgtttgcctttccaatattgtaaactg |
395 |
Q |
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| T |
33499282 |
attggccatctttgatggtcctatgagacattttatggtgtttaaactagttaaattatttgctttttgtgtttgcttttctaatattgtaaactg |
33499377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 33485771 - 33485866
Alignment:
| Q |
1 |
ataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaaccttctcttctct |
96 |
Q |
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| T |
33485771 |
ataagattgatgttatttctgccaacattatgtgcaatgcaaatggaaacttctacatgattatggcccatgtaagtttcaaaccttctctcctct |
33485866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 98 - 248
Target Start/End: Original strand, 33486062 - 33486212
Alignment:
| Q |
98 |
gagtagtgtgagtgcgaatagctcaattgaattgtgttgattttgcaggcaaaacaagcttcacttggcgcaaactcgatggaggaaacttacaagcaag |
197 |
Q |
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| T |
33486062 |
gagtagtacgagtgtgaatagctcaattgaattgtcttaattttgcaggcaaaacaagcttcacatgacgcaaattcaatgaaggaaacatacaagcatg |
33486161 |
T |
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| Q |
198 |
cagctttagaaattatgacgaggatcgcttaaaattttgatcataaaactt |
248 |
Q |
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| T |
33486162 |
cggctggagaaattatgatgtggatcgcttagaattttgatcataaaactt |
33486212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 33486210 - 33486284
Alignment:
| Q |
309 |
ctttgatggtcctatgagacatttt-atggtgtttaaactag-ttaaattatttgctttttgtgtttgcctttcc |
381 |
Q |
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| T |
33486210 |
ctttgatggtcctaagagcaatttttatggtgtttaaactagttttaattatatgctttttgtgtttgcttttcc |
33486284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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