View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_398 (Length: 211)
Name: NF8810A_low_398
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_398 |
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Alignment Details
Target: chr8 (Bit Score: 79; Significance: 4e-37; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 15899738 - 15899861
Alignment:
| Q |
57 |
aagatgctaacgaagcatgtaaacttttgtttnnnnnnnttgatgataatattgaagaattgaagaatatgttcactgaggatgcaattgaaggctacaa |
156 |
Q |
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| T |
15899738 |
aagatgctaacgaagcatgtatgcttttgcttaaaaagattgaagataatattgaagatttgaagaatatgttcactgaggatgcaattgaaggctacaa |
15899837 |
T |
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| Q |
157 |
taataatgatcttgcttggatatt |
180 |
Q |
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| T |
15899838 |
tgataatgatcttgcttggatatt |
15899861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 15874331 - 15874208
Alignment:
| Q |
57 |
aagatgctaacgaagcatgtaaacttttgtttnnnnnnnttgatgataatattgaagaattgaagaatatgttcactgaggatgcaattgaaggctacaa |
156 |
Q |
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|||||| ||||||||||||||| |||||| || |||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
15874331 |
aagatgataacgaagcatgtaagcttttgcttaaaaagattgaagataatattgaaaatgtgaagaatatgttcactgaggatgcaattgaaggctacaa |
15874232 |
T |
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| Q |
157 |
taataatgatcttgcttggatatt |
180 |
Q |
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| T |
15874231 |
tgataatgatcttgcttggatatt |
15874208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 57 - 180
Target Start/End: Original strand, 15920766 - 15920889
Alignment:
| Q |
57 |
aagatgctaacgaagcatgtaaacttttgtttnnnnnnnttgatgataatattgaagaattgaagaatatgttcactgaggatgcaattgaaggctacaa |
156 |
Q |
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|||||| |||||||||||||| |||||| || |||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
15920766 |
aagatgttaacgaagcatgtatgcttttgcttaaaaagattgaagataatattgaatatttgaagaatatgttcactgaggatgcaattgaaggctacaa |
15920865 |
T |
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| Q |
157 |
taataatgatcttgcttggatatt |
180 |
Q |
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| T |
15920866 |
tgataatgatcttgcttggatatt |
15920889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 56 - 185
Target Start/End: Complemental strand, 14060747 - 14060618
Alignment:
| Q |
56 |
caagatgctaacgaagcatgtaaacttttgtttnnnnnnnttgatgataatattgaagaattgaagaatatgttcactgaggatgcaattgaaggctaca |
155 |
Q |
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||||||| |||| ||||||| ||||||||| || |||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| | || |
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| T |
14060747 |
caagatggtaaccaagcatgcaaacttttgcttaacaagattgaagataatattgaagaattgaagaacatgttcactgaagatgcaattgaaggattca |
14060648 |
T |
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| Q |
156 |
ataataatgatcttgcttggatattcttcg |
185 |
Q |
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| T |
14060647 |
atgacaatgatcttgcttggatattgttcg |
14060618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 96 - 185
Target Start/End: Complemental strand, 14049336 - 14049247
Alignment:
| Q |
96 |
ttgatgataatattgaagaattgaagaatatgttcactgaggatgcaattgaaggctacaataataatgatcttgcttggatattcttcg |
185 |
Q |
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|||| |||||||||| |||||||||||| |||||||| || |||||||||||||| | |||| | || ||||||||||||||||| |||| |
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| T |
14049336 |
ttgaagataatattgtagaattgaagaacatgttcacggaagatgcaattgaaggattcaatgacaacgatcttgcttggatattgttcg |
14049247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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