View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_404 (Length: 208)

Name: NF8810A_low_404
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_404
NF8810A_low_404
[»] chr1 (6 HSPs)
chr1 (17-208)||(8267935-8268126)
chr1 (22-105)||(33054941-33055024)
chr1 (22-105)||(41098061-41098144)
chr1 (17-91)||(33054516-33054590)
chr1 (101-143)||(8268120-8268162)
chr1 (73-105)||(17536684-17536716)
[»] chr8 (4 HSPs)
chr8 (17-105)||(37771614-37771702)
chr8 (17-105)||(8331425-8331513)
chr8 (17-105)||(25368096-25368184)
chr8 (17-105)||(34818803-34818891)
[»] chr2 (4 HSPs)
chr2 (17-105)||(6297990-6298078)
chr2 (17-104)||(19538290-19538376)
chr2 (29-74)||(11658979-11659024)
chr2 (54-104)||(28854864-28854913)
[»] scaffold0061 (1 HSPs)
scaffold0061 (17-105)||(45687-45775)
[»] scaffold0017 (1 HSPs)
scaffold0017 (17-105)||(153012-153100)
[»] chr5 (6 HSPs)
chr5 (17-105)||(13301590-13301678)
chr5 (17-105)||(31731446-31731534)
chr5 (24-105)||(21324077-21324158)
chr5 (37-99)||(23977425-23977487)
chr5 (41-105)||(36949041-36949104)
chr5 (40-103)||(1430085-1430147)
[»] chr4 (4 HSPs)
chr4 (17-105)||(7903202-7903290)
chr4 (17-105)||(34560400-34560488)
chr4 (22-96)||(31298498-31298571)
chr4 (17-79)||(41816713-41816775)
[»] chr7 (3 HSPs)
chr7 (22-105)||(27256145-27256228)
chr7 (17-105)||(40865457-40865545)
chr7 (29-105)||(19640183-19640258)
[»] scaffold0041 (1 HSPs)
scaffold0041 (24-105)||(35766-35847)
[»] scaffold0060 (2 HSPs)
scaffold0060 (22-105)||(53009-53092)
scaffold0060 (17-105)||(47961-48049)
[»] chr6 (3 HSPs)
chr6 (17-102)||(6113077-6113162)
chr6 (17-105)||(12662712-12662801)
chr6 (29-104)||(5601063-5601137)
[»] chr3 (5 HSPs)
chr3 (17-105)||(10586287-10586375)
chr3 (17-105)||(31002600-31002688)
chr3 (44-105)||(795511-795572)
chr3 (17-90)||(45904553-45904626)
chr3 (17-90)||(45905009-45905082)
[»] scaffold0070 (1 HSPs)
scaffold0070 (37-105)||(62939-63007)
[»] scaffold0020 (1 HSPs)
scaffold0020 (17-105)||(1330-1418)
[»] scaffold0027 (1 HSPs)
scaffold0027 (41-105)||(43028-43091)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 8267935 - 8268126
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaagactcatatga 116  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8267935 ggacttcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgtaaaacaacaagactcatatga 8268034  T
Q  117 agatattgttgatttaagaaacaatttagggctagtttctactaagaccaaacaagctctggattttctgagttcattcaggactgacaagg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| ||||||    
T  8268035 agatattgttgatttaagaaacaatttagggctagtttctactaagacccaacaagctctggattttctgagttcatcctggactaacaagg 8268126  T

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Target: chr1; HSP #2
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 33055024 - 33054941
Alignment:
Q  22 tcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  33055024 tcaagaagactcaacatggtaatatcttcgatagtgatttcaattttattaaaaaggtacatttctgaacccgaaaaacaacaa 33054941  T

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Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 41098061 - 41098144
Alignment:
Q  22 tcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    ||||||||||| |||||||||||||||||| || ||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  41098061 tcaagaagacttaacatggtaatatcttcggtgttgatttcgactttattaaaaaggtacgcttctgaacccgaaaaacaacaa 41098144  T

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Target: chr1; HSP #4
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 33054516 - 33054590
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaac 91  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  33054516 ggacttcaagaagactcaacatggtaatatcttcggtggtgatttcgattttattaaaaagttacgtttctgaac 33054590  T

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Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 8268120 - 8268162
Alignment:
Q  101 aacaagactcatatgaagatattgttgatttaagaaacaattt 143  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  8268120 aacaaggctcatatgaagatattgttgatttaagaaacaattt 8268162  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 17536684 - 17536716
Alignment:
Q  73 aaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    ||||||||||||||||||| |||||||||||||    
T  17536684 aaaaggtacgtttctgaactcgaaaaacaacaa 17536716  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 37771702 - 37771614
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  37771702 ggacttcaagaagactcaacatggtaatatcttcggtggtgatttcgactttattaaaaaggtacgcttctgaacccgaaaaacaacaa 37771614  T

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Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 8331425 - 8331513
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| | ||||||||||||||||||||||    
T  8331425 ggacttcaagaagactcaacatggtaatatcttcggtggtgatttcgactttattaaaaaggtatgcttctgaacccgaaaaacaacaa 8331513  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 25368096 - 25368184
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    |||| |||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||||||||||    
T  25368096 ggacttcaagaagactcaaaatggtaatatcttcggtggtgatttcgactttattaaaaaggtacgcttctgaactcgaaaaacaacaa 25368184  T

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Target: chr8; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 34818803 - 34818891
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    |||| ||||||||||||||| ||||||||||||||||||| |||| || ||||||||||||||||| |||||||||| |||||||||||    
T  34818803 ggacttcaagaagactcaacttggtaatatcttcgatggtaattttgactttattaaaaaggtacgcttctgaacccaaaaaacaacaa 34818891  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 6297990 - 6298078
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  6297990 ggacttcaagaagactcaacatggtaatatcttcggtggtgatttcgactttattaaaaaggtacgcttctgaacccgaaaaacaacaa 6298078  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 19538376 - 19538290
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaaca 104  Q
    |||| ||||| ||||||||| |||||||||||||| ||||||||| ||||||||| ||||||||||||||||||| | ||||||||||    
T  19538376 ggacgtcaagcagactcaacctggtaatatcttcggtggtgatttagattttatt-aaaaggtacgtttctgaactcaaaaaacaaca 19538290  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 11658979 - 11659024
Alignment:
Q  29 gactcaacatggtaatatcttcgatggtgatttcgattttattaaa 74  Q
    |||||||| || ||||||||||| ||||||||||||||||||||||    
T  11658979 gactcaacctgataatatcttcggtggtgatttcgattttattaaa 11659024  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 28854913 - 28854864
Alignment:
Q  54 ggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaaca 104  Q
    |||||||||||||||||| ||||| ||||||||||| | ||||||||||||    
T  28854913 ggtgatttcgattttatt-aaaagatacgtttctgagctcgaaaaacaaca 28854864  T

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Target: scaffold0061 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 45775 - 45687
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    |||| |||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  45775 ggacttcaagaagactcaacatggtaatatcttcggtggtgatttcaactttattaaaaaggtacgcttctgaacccgaaaaacaacaa 45687  T

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Target: scaffold0017 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 153012 - 153100
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    |||| |||||||||||||||||||||||||||||| |||||||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  153012 ggacttcaagaagactcaacatggtaatatcttcggtggtgatttcaactttattaaaaaggtacgcttctgaacccgaaaaacaacaa 153100  T

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Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 13301590 - 13301678
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||| ||||||||||||||||||||||    
T  13301590 ggacttcaagaagactcaacatggtaatatcttcggtggtgattttgactttattaaaaaggtacgcttctgaacccgaaaaacaacaa 13301678  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 31731534 - 31731446
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| || |||||||||||||||||||    
T  31731534 ggacttcaagaagactcaacatggtaatatcttcggtggtgatttcgactttattaaaaaggtacgcttttgaacccgaaaaacaacaa 31731446  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 21324077 - 21324158
Alignment:
Q  24 aagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    ||||||||||||| |||||||||||||| |||||||||||| ||| ||||||| ||| | |||||||||||||||| |||||    
T  21324077 aagaagactcaacgtggtaatatcttcggtggtgatttcgacttttttaaaaaagtatgcttctgaacccgaaaaataacaa 21324158  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 99
Target Start/End: Original strand, 23977425 - 23977487
Alignment:
Q  37 atggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaa 99  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||| | | |||||||||    
T  23977425 atggtaatatcttcggtggtgatttcgattttattaaaaaagtacgttttttatcccgaaaaa 23977487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 36949104 - 36949041
Alignment:
Q  41 taatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    ||||||||||| |||||||||||||||||||||||| |||| |||||||||  ||||||||||||    
T  36949104 taatatcttcggtggtgatttcgattttattaaaaa-gtacttttctgaacttgaaaaacaacaa 36949041  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 1430085 - 1430147
Alignment:
Q  40 gtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaac 103  Q
    |||||||||||  ||||||||||||||||||| ||||| ||  ||||||||| |||||||||||    
T  1430085 gtaatatcttcagtggtgatttcgattttatt-aaaagctatttttctgaactcgaaaaacaac 1430147  T

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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 7903202 - 7903290
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    |||| |||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  7903202 ggacttcaagaagactcaacatggtaatatctttggtggtgatttcgactttattaaaaaggtacgcttctgaacccgaaaaacaacaa 7903290  T

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Target: chr4; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 34560488 - 34560400
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    |||| |||||||||||||||||| ||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||| ||||    
T  34560488 ggacttcaagaagactcaacatgataatatcttcggtggtgatttcaactttattaaaaaggtacgtttctgaacccgaaaaacgacaa 34560400  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 31298498 - 31298571
Alignment:
Q  22 tcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaa 96  Q
    |||||||||||||||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||| ||||||    
T  31298498 tcaagaagactcaacatggtaataccttcaatgatgatttcgattttattaaaaa-gtacgtttctgaccccgaa 31298571  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 17 - 79
Target Start/End: Complemental strand, 41816775 - 41816713
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggt 79  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||    
T  41816775 ggacttcaagaagactcaacatggtaatatcttcggtggtgattttgattttatcaaaaaggt 41816713  T

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Target: chr7 (Bit Score: 68; Significance: 1e-30; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 27256228 - 27256145
Alignment:
Q  22 tcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||||||||||    
T  27256228 tcaagaagactcaacatggtaatatcttcggtggtgatttcgactttattaaaaaggtacgcttctgaactcgaaaaacaacaa 27256145  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 40865457 - 40865545
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||  ||||||||||||||||||||||    
T  40865457 ggacttcaagaagactcaacatggtaatatcttcggtggtgatttcgactttattaaataggtactcttctgaacccgaaaaacaacaa 40865545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 29 - 105
Target Start/End: Complemental strand, 19640258 - 19640183
Alignment:
Q  29 gactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    ||||||||  ||||||||||||| ||||||||||||||||||| ||||||||| |||  |||| |||||||||||||    
T  19640258 gactcaacccggtaatatcttcggtggtgatttcgattttatt-aaaaggtactttttagaactcgaaaaacaacaa 19640183  T

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Target: scaffold0041 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 35766 - 35847
Alignment:
Q  24 aagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| || |||||||||||||||||||    
T  35766 aagaagactcaacatggtaatatcttcggtggtgatttcgactttattaaaaaggtacgcttatgaacccgaaaaacaacaa 35847  T

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Target: scaffold0060 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 53009 - 53092
Alignment:
Q  22 tcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    |||||||||||||||||| |||||||||||||||||||||||| |||||| |||||||||| |||||||| |||||||||||||    
T  53009 tcaagaagactcaacatgataatatcttcgatggtgatttcgactttattgaaaaggtacgcttctgaacgcgaaaaacaacaa 53092  T

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Target: scaffold0060; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 47961 - 48049
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    |||| |||||||||||||||||||||||||||||| ||||||||| || |||||| ||||| |||| ||||||||||||||||||||||    
T  47961 ggacttcaagaagactcaacatggtaatatcttcggtggtgattttgactttattgaaaagttacgcttctgaacccgaaaaacaacaa 48049  T

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Target: chr6 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 6113077 - 6113162
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaa 102  Q
    |||| |||| ||||||||||||| ||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||    
T  6113077 ggacttcaataagactcaacatgataatatcttcggtgatgatttcgattttatcaaaaaggtacgtttctgaacccgaaaaacaa 6113162  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 12662712 - 12662801
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcga-ttttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    |||| |||||||||||||||| | |||||||||||  ||||||||||| |||||||||||||||||  ||||||||||||||||||||||    
T  12662712 ggacttcaagaagactcaacaagataatatcttcggcggtgatttcgacttttattaaaaaggtacacttctgaacccgaaaaacaacaa 12662801  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 5601063 - 5601137
Alignment:
Q  29 gactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaaca 104  Q
    |||||||| || ||||||| | |||||||||||||||||| || ||||||||| |||||||||  |||||| ||||    
T  5601063 gactcaacctgataatatccttgatggtgatttcgattttgtt-aaaaggtacttttctgaacttgaaaaataaca 5601137  T

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Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 10586287 - 10586375
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||| || || |||| |||||||||||||||||    
T  10586287 ggacttcaagaagactcaacatggtaatatcttcggtggtgatttcgactttattaaaaatgttcgcttctaaacccgaaaaacaacaa 10586375  T

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Target: chr3; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 31002688 - 31002600
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    |||| |||||||||||||||||||| ||||||| | |||||||||||| ||||||||||||||||| ||||||||| ||||||||||||    
T  31002688 ggacttcaagaagactcaacatggtgatatcttaggtggtgatttcgactttattaaaaaggtacgcttctgaacctgaaaaacaacaa 31002600  T

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Target: chr3; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 795511 - 795572
Alignment:
Q  44 tatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    |||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  795511 tatcttcggtggtgatttcgattttattaaaaaggtacttttctgaactcgaaaaacaacaa 795572  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 45904553 - 45904626
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaa 90  Q
    |||| ||||||||||||||||||||||||| || |||| |||||| || ||||||||||||||||| |||||||    
T  45904553 ggacttcaagaagactcaacatggtaatatttttgatgatgattttgactttattaaaaaggtacgcttctgaa 45904626  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 45905009 - 45905082
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaa 90  Q
    |||| |||||||||||||||||| |||||| |||| ||||||||| || ||||||||||||||||| |||||||    
T  45905009 ggacttcaagaagactcaacatgataatattttcggtggtgattttgactttattaaaaaggtacgcttctgaa 45905082  T

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Target: scaffold0070 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 37 - 105
Target Start/End: Complemental strand, 63007 - 62939
Alignment:
Q  37 atggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||| |||||||| |||||||||||||    
T  63007 atggtaatatcttcggtggtgatttcgactttattaaaaaggtacgcttctgaactcgaaaaacaacaa 62939  T

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Target: scaffold0020 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 17 - 105
Target Start/End: Original strand, 1330 - 1418
Alignment:
Q  17 ggacatcaagaagactcaacatggtaatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    |||| ||||||| ||| |||||||||||||||||| |||||||||||| |||||||| |||||||| || |||||  ||||||||||||    
T  1330 ggacttcaagaatacttaacatggtaatatcttcggtggtgatttcgactttattaagaaggtacgcttatgaactagaaaaacaacaa 1418  T

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Target: scaffold0027 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 105
Target Start/End: Complemental strand, 43091 - 43028
Alignment:
Q  41 taatatcttcgatggtgatttcgattttattaaaaaggtacgtttctgaacccgaaaaacaacaa 105  Q
    ||||||||||| |||| ||||||||||| |||||| ||||| ||||||||| |||||||||||||    
T  43091 taatatcttcggtggtaatttcgattttgttaaaa-ggtacttttctgaactcgaaaaacaacaa 43028  T

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