View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_405 (Length: 208)

Name: NF8810A_low_405
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_405
NF8810A_low_405
[»] chr1 (4 HSPs)
chr1 (23-193)||(47666362-47666532)
chr1 (78-183)||(28858624-28858729)
chr1 (58-104)||(33827732-33827778)
chr1 (58-104)||(33840187-33840233)
[»] chr4 (2 HSPs)
chr4 (71-182)||(52339199-52339310)
chr4 (64-178)||(43491115-43491229)
[»] chr3 (6 HSPs)
chr3 (79-180)||(20330457-20330558)
chr3 (72-182)||(26888322-26888432)
chr3 (59-160)||(20281883-20281983)
chr3 (59-160)||(20309497-20309598)
chr3 (59-160)||(20331678-20331779)
chr3 (86-184)||(26890847-26890945)
[»] chr7 (2 HSPs)
chr7 (65-184)||(27878602-27878721)
chr7 (139-183)||(32868354-32868398)
[»] chr8 (1 HSPs)
chr8 (111-187)||(28339312-28339388)


Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 23 - 193
Target Start/End: Original strand, 47666362 - 47666532
Alignment:
Q  23 cactggacacgttggctaatcgttgccaccacagagagattatgggttgagggaccaaaactcaagtgattaatattcgcagcgcaaatttgaaaggatt 122  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||    
T  47666362 cactggacaagttggctaatcgttgccaccacagagagattatgggttgagagaccaaaactcaagtgattaatattttcagcgcaaatttgaaaggatt 47666461  T
Q  123 agaaaaatcagagactaaaactcaagtgacccctatttgcagggactaaacgtataaataagtctatgatt 193  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47666462 agaaaattcagagactaaaactcaagtgacccctatttgcagggactaaacgtataaataagcctatgatt 47666532  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 183
Target Start/End: Original strand, 28858624 - 28858729
Alignment:
Q  78 caaaactcaagtgattaatattcgcagcgcaaatttgaaaggattagaaaaatcagagactaaaactcaagtgacccctatttgcagggactaaacgtat 177  Q
    ||||| |||||||||||||||| |||   |||||||||||||||||| ||| | |  ||  ||||||||| | |||||||||| |||||||| ||| |||    
T  28858624 caaaagtcaagtgattaatatttgcatgacaaatttgaaaggattagcaaattaatggaacaaaactcaaataacccctatttacagggacttaacatat 28858723  T
Q  178 aaataa 183  Q
    ||||||    
T  28858724 aaataa 28858729  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 33827732 - 33827778
Alignment:
Q  58 gagattatgggttgagggaccaaaactcaagtgattaatattcgcag 104  Q
    |||| |||| ||| |||||||||||||||||||||||||||| ||||    
T  33827732 gagactatgagtttagggaccaaaactcaagtgattaatatttgcag 33827778  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 104
Target Start/End: Complemental strand, 33840233 - 33840187
Alignment:
Q  58 gagattatgggttgagggaccaaaactcaagtgattaatattcgcag 104  Q
    |||| |||| ||| |||||||||||||||||||||||||||| ||||    
T  33840233 gagactatgagtttagggaccaaaactcaagtgattaatatttgcag 33840187  T

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Target: chr4 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 71 - 182
Target Start/End: Complemental strand, 52339310 - 52339199
Alignment:
Q  71 gagggaccaaaactcaagtgattaatattcgcagcgcaaatttgaaaggattagaaaaatcagagactaaaactcaagtgacccctatttgcagggacta 170  Q
    |||||||||||| |||||||||||||||| |||| | ||  ||||||||||||| ||| |||| ||| ||||||| | ||||||||||||||||||||||    
T  52339310 gagggaccaaaagtcaagtgattaatatttgcagggaaagattgaaaggattagtaaattcagggaccaaaactctaatgacccctatttgcagggacta 52339211  T
Q  171 aacgtataaata 182  Q
    || |||||||||    
T  52339210 aatgtataaata 52339199  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 64 - 178
Target Start/End: Original strand, 43491115 - 43491229
Alignment:
Q  64 atgggttgagggaccaaaactcaagtgattaatattcgcagcgcaaatttgaaaggattagaaaaatcagagactaaaactcaagtgacccctatttgca 163  Q
    |||||||  ||||| ||||||| |||||||||| || |||   |||| ||||||||||||  ||| |||   || ||||||||||||||||||||||| |    
T  43491115 atgggtttggggactaaaactcgagtgattaatctttgcaaaacaaaattgaaaggattaacaaattcatgaaccaaaactcaagtgacccctatttgta 43491214  T
Q  164 gggactaaacgtata 178  Q
     ||||||||| ||||    
T  43491215 aggactaaacatata 43491229  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 79 - 180
Target Start/End: Complemental strand, 20330558 - 20330457
Alignment:
Q  79 aaaactcaagtgattaatattcgcagcgcaaatttgaaaggattagaaaaatcagagactaaaactcaagtgacccctatttgcagggactaaacgtata 178  Q
    |||||| |||||||||||||| |||| |||||| | |||||||||| ||| |||||||| |||| ||||   ||||||||||| |||||||||| |||||    
T  20330558 aaaacttaagtgattaatatttgcagggcaaatataaaaggattagtaaagtcagagaccaaaattcaaactacccctatttgtagggactaaatgtata 20330459  T
Q  179 aa 180  Q
    ||    
T  20330458 aa 20330457  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 72 - 182
Target Start/End: Complemental strand, 26888432 - 26888322
Alignment:
Q  72 agggaccaaaactcaagtgattaatattcgcagcgcaaatttgaaaggattagaaaaatcagagactaaaactcaagtgacccctatttgcagggactaa 171  Q
    |||||||||||| ||||||||||||||| | |   || ||||||||||||| | ||| |||| ||| ||||||||||| ||  ||||| | |||||||||    
T  26888432 agggaccaaaacacaagtgattaatatttggacgtcagatttgaaaggattggcaaattcagggaccaaaactcaagtaacaactattaggagggactaa 26888333  T
Q  172 acgtataaata 182  Q
    | |||||||||    
T  26888332 atgtataaata 26888322  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 160
Target Start/End: Original strand, 20281883 - 20281983
Alignment:
Q  59 agattatgggttgagggaccaaaactcaagtgattaatattcgcagcgcaaatttgaaaggattagaaaaatcagagactaaaactcaagtgacccctat 158  Q
    |||||||||| | |||||||||||||||||||||| ||||| |||| |||| ||||||| |||| | ||| ||| ||||  ||| |||| ||||||||||    
T  20281883 agattatgggctcagggaccaaaactcaagtgattgatatttgcagagcaagtttgaaa-gattggtaaattcaaagaccgaaattcaaatgacccctat 20281981  T
Q  159 tt 160  Q
    ||    
T  20281982 tt 20281983  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 160
Target Start/End: Original strand, 20309497 - 20309598
Alignment:
Q  59 agattatgggttgagggaccaaaactcaagtgattaatattcgcagcgcaaatttgaaaggattagaaaaatcagagactaaaactcaagtgacccctat 158  Q
    ||||| |||| | |||||||||||||||||||||||||| | |||  |||| |||||||||||| | ||| |||| ||| |||| |||| |||||| |||    
T  20309497 agattgtgggctcagggaccaaaactcaagtgattaataattgcaaggcaagtttgaaaggattggtaaattcagggaccaaaattcaaatgacccttat 20309596  T
Q  159 tt 160  Q
    ||    
T  20309597 tt 20309598  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 160
Target Start/End: Original strand, 20331678 - 20331779
Alignment:
Q  59 agattatgggttgagggaccaaaactcaagtgattaatattcgcagcgcaaatttgaaaggattagaaaaatcagagactaaaactcaagtgacccctat 158  Q
    |||||||||| | || ||||||||||||||||||||||| | |||  |||| |||||||||||| | ||| |||| ||| | || |||| ||||||||||    
T  20331678 agattatgggcttagagaccaaaactcaagtgattaataattgcaaggcaagtttgaaaggattggtaaattcagggaccagaattcaaatgacccctat 20331777  T
Q  159 tt 160  Q
    ||    
T  20331778 tt 20331779  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 86 - 184
Target Start/End: Original strand, 26890847 - 26890945
Alignment:
Q  86 aagtgattaatattcgcagcgcaaatttgaaaggattagaaaaatcagagactaaaactcaagtgacccctatttgcagggactaaacgtataaataag 184  Q
    |||||||| ||||| |||   |||||||||||| ||||| ||| |||||||| | |||| ||||||||| | |||| |||||||| | |||||||||||    
T  26890847 aagtgattcatatttgcatgtcaaatttgaaagaattagcaaattcagagaccataacttaagtgacccttttttggagggactagatgtataaataag 26890945  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 65 - 184
Target Start/End: Original strand, 27878602 - 27878721
Alignment:
Q  65 tgggttgagggaccaaaactcaagtgattaatattcgcagcgcaaatttgaaaggattagaaaaatcagagactaaaactcaagtgacccctatttgcag 164  Q
    |||||| | ||| ||||| |||||||||||||||| |||  ||||| || | |||||||| ||| |||  ||| |||||||||||||| ||||||| |||    
T  27878602 tgggttcaaggatcaaaagtcaagtgattaatatttgcatggcaaaatttagaggattagcaaattcacggacgaaaactcaagtgacacctatttacag 27878701  T
Q  165 ggactaaacgtataaataag 184  Q
    ||||||| | ||||||||||    
T  27878702 ggactaagcatataaataag 27878721  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 32868354 - 32868398
Alignment:
Q  139 aaaactcaagtgacccctatttgcagggactaaacgtataaataa 183  Q
    ||||||||||||||||||||||| |  ||||||||||||| ||||    
T  32868354 aaaactcaagtgacccctatttgtaaagactaaacgtatagataa 32868398  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 187
Target Start/End: Original strand, 28339312 - 28339388
Alignment:
Q  111 tttgaaaggattagaaaaatcagagactaaaactcaagtgacccctatttgcagggactaaacgtataaataagtct 187  Q
    ||||||| |||||| ||| |||| ||| ||   |||| |||||||||||||||||||||||| ||||| ||| ||||    
T  28339312 tttgaaatgattagtaaattcagggaccaagtttcaaatgacccctatttgcagggactaaaggtatatatatgtct 28339388  T

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