View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_407 (Length: 206)

Name: NF8810A_low_407
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_407
NF8810A_low_407
[»] chr7 (7 HSPs)
chr7 (1-206)||(28428882-28429087)
chr7 (42-181)||(15673010-15673151)
chr7 (77-155)||(25102630-25102708)
chr7 (77-153)||(18503171-18503247)
chr7 (42-152)||(34703029-34703139)
chr7 (46-111)||(34183106-34183171)
chr7 (46-111)||(34203695-34203760)
[»] chr5 (8 HSPs)
chr5 (77-179)||(5868363-5868465)
chr5 (77-180)||(7883867-7883970)
chr5 (46-145)||(33134088-33134187)
chr5 (78-159)||(29860855-29860936)
chr5 (42-127)||(31077867-31077952)
chr5 (39-153)||(15922239-15922353)
chr5 (77-127)||(25347155-25347205)
chr5 (41-159)||(42683969-42684087)
[»] chr3 (5 HSPs)
chr3 (46-179)||(28457840-28457973)
chr3 (77-181)||(21495051-21495154)
chr3 (77-152)||(46663198-46663272)
chr3 (143-180)||(29181735-29181772)
chr3 (46-179)||(33072591-33072724)
[»] scaffold0957 (1 HSPs)
scaffold0957 (46-128)||(1674-1756)
[»] chr8 (6 HSPs)
chr8 (46-179)||(32962023-32962156)
chr8 (47-127)||(16456515-16456595)
chr8 (8-179)||(15268593-15268764)
chr8 (42-180)||(16295304-16295442)
chr8 (42-180)||(16303006-16303144)
chr8 (85-159)||(37246152-37246226)
[»] chr2 (4 HSPs)
chr2 (46-179)||(13349562-13349695)
chr2 (83-151)||(41595236-41595304)
chr2 (46-159)||(37485588-37485701)
chr2 (77-153)||(40619788-40619864)
[»] chr1 (5 HSPs)
chr1 (46-179)||(28622974-28623107)
chr1 (77-179)||(37347104-37347206)
chr1 (42-153)||(49549507-49549618)
chr1 (77-130)||(46239074-46239127)
chr1 (77-153)||(48527377-48527453)
[»] chr6 (5 HSPs)
chr6 (77-179)||(12255078-12255180)
chr6 (42-159)||(23404474-23404591)
chr6 (77-150)||(29979489-29979562)
chr6 (42-130)||(32329367-32329454)
chr6 (84-178)||(12267316-12267410)
[»] chr4 (6 HSPs)
chr4 (84-179)||(3767703-3767798)
chr4 (46-157)||(34513815-34513926)
chr4 (46-156)||(28115987-28116097)
chr4 (77-127)||(17702147-17702197)
chr4 (46-128)||(34940309-34940391)
chr4 (78-111)||(53923754-53923787)
[»] scaffold0702 (1 HSPs)
scaffold0702 (46-144)||(4035-4132)
[»] scaffold0662 (1 HSPs)
scaffold0662 (46-144)||(3970-4067)


Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 28429087 - 28428882
Alignment:
Q  1 taatcctattaggaaagtttctaacctaacatatatgtaaaatataaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatct 100  Q
    |||||||||||||| | |||| |||||||||||||| ||||||||||||||||||   |||||||||||||||||||||||| |||||||||||| || |    
T  28429087 taatcctattaggataatttcaaacctaacatatatttaaaatataaattacaaagataagttaggataagattacaaaataatttattttatcctattt 28428988  T
Q  101 ctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatcatgtcttcatatcatgactatcaaacatgacatttgtcctaattcct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  28428987 ctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatcatgtcttcgtatcataactatcaaacatgacatttgtcctaattcct 28428888  T
Q  201 ccttga 206  Q
    ||||||    
T  28428887 ccttga 28428882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 42 - 181
Target Start/End: Original strand, 15673010 - 15673151
Alignment:
Q  42 atataaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatg--atgtgat 139  Q
    ||||||||| |||| | |||| |||||| |||   ||||| ||||||||||||| ||||||||||||||| |||||| |||||||| || |  || ||||    
T  15673010 atataaattgcaaaggaaagtcaggatatgataggaaaatggtttattttatcctatctctttggtgcatcaaacatgagatttaagcaggatatatgat 15673109  T
Q  140 aaatttatcatatcatgtcttcatatcatgactatcaaacat 181  Q
     ||| ||||||||| || || | |||| |||| |||||||||    
T  15673110 taatgtatcatatcctgcctccctatcttgaccatcaaacat 15673151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 25102708 - 25102630
Alignment:
Q  77 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatcat 155  Q
    |||||| |||||||||||| |||| |||||||||| |||||| ||||||||  |  ||||||||||| |||||||||||    
T  25102708 aaaataatttattttatcctatctatttggtgcatcaaacatgagatttaagtagaatgtgataaatatatcatatcat 25102630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 18503171 - 18503247
Alignment:
Q  77 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatc 153  Q
    ||||| ||||||||||||| ||||||||||||||| |||||| | |||||| || ||| |||| ||| |||||||||    
T  18503171 aaaatggtttattttatcctatctctttggtgcatcaaacatgatatttaagcaggatatgattaatgtatcatatc 18503247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 152
Target Start/End: Complemental strand, 34703139 - 34703029
Alignment:
Q  42 atataaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataa 141  Q
    |||||||||||||| | |||| |||||| |||   ||||||||||||||||||  ||   |||||||||| ||||||  ||||||| || ||| |||| |    
T  34703139 atataaattacaaaggaaagtcaggatatgataggaaaatagtttattttatcatatacttttggtgcatcaaacatgtgatttaagcaggatatgatta 34703040  T
Q  142 atttatcatat 152  Q
    || ||||||||    
T  34703039 atgtatcatat 34703029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 34183171 - 34183106
Alignment:
Q  46 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcat 111  Q
    |||||| ||| |||||| |||||| |||   ||||||||||||||||||| |||||||| ||||||    
T  34183171 aaattataaaggcaagtcaggataggatagaaaaatagtttattttatcctatctctttagtgcat 34183106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 34203760 - 34203695
Alignment:
Q  46 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcat 111  Q
    |||||| ||| |||||| |||||| |||   ||||||||||||||||||| |||||||| ||||||    
T  34203760 aaattataaaggcaagtcaggataggatagaaaaatagtttattttatcctatctctttagtgcat 34203695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 5868363 - 5868465
Alignment:
Q  77 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatcatgtcttcatatcatgactatca 176  Q
    ||||| ||||||||||||| ||||||||||||||| |||||| ||||||||  | |||||||| ||| ||||||||| ||||| | |||| |||| ||||    
T  5868363 aaaatggtttattttatcctatctctttggtgcatcaaacatgagatttaagtaggatgtgattaatatatcatatcttgtctccctatcctgaccatca 5868462  T
Q  177 aac 179  Q
    |||    
T  5868463 aac 5868465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 77 - 180
Target Start/End: Original strand, 7883867 - 7883970
Alignment:
Q  77 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatcatgtcttcatatcatgactatca 176  Q
    ||||| ||||||||||||| ||| ||||| ||||| ||||||||||||||| || ||| |||| ||| ||||||||| ||||| | |||| |||| ||||    
T  7883867 aaaatggtttattttatcctatccctttgatgcatcaaacataagatttaagcaggatatgattaatgtatcatatcctgtctccctatcctgaccatca 7883966  T
Q  177 aaca 180  Q
    ||||    
T  7883967 aaca 7883970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 33134187 - 33134088
Alignment:
Q  46 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaattt 145  Q
    |||||||||| | |||| |||||| |||   ||||| ||||||||||||| ||| ||||||||||||||||||||||||||| || ||| |||| |||||    
T  33134187 aaattacaaaggaaagtcaggataggataggaaaatggtttattttatcctatccctttggtgcattaaacataagatttaagcaggatatgattaattt 33134088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 159
Target Start/End: Complemental strand, 29860936 - 29860855
Alignment:
Q  78 aaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatcatgtct 159  Q
    |||| ||||||||||||| ||||||||||||||| |||||| | |||||| ||  || |||| ||| |||||||||||||||    
T  29860936 aaatggtttattttatcctatctctttggtgcatcaaacatgaaatttaagcagaatatgattaatgtatcatatcatgtct 29860855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 127
Target Start/End: Complemental strand, 31077952 - 31077867
Alignment:
Q  42 atataaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaa 127  Q
    |||||||||||||| | |||| | ||||  || | ||||||||||||||||||| | | ||||||||||| |||||| ||||||||    
T  31077952 atataaattacaaaggaaagtcatgatagaataagaaaatagtttattttatcctaaccctttggtgcatcaaacattagatttaa 31077867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 153
Target Start/End: Original strand, 15922239 - 15922353
Alignment:
Q  39 aaaatataaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtga 138  Q
    |||||| |||||||||| | |||| | |||| |||   |||||| |||||||||||  ||| ||||| ||||| |||||| |||||||| || ||| |||    
T  15922239 aaaatagaaattacaaaggaaagtcatgatatgatagaaaaataatttattttatcatatcactttgatgcatcaaacatgagatttaagcaagatatga 15922338  T
Q  139 taaatttatcatatc 153  Q
    | ||| |||||||||    
T  15922339 ttaatgtatcatatc 15922353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 127
Target Start/End: Original strand, 25347155 - 25347205
Alignment:
Q  77 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaa 127  Q
    ||||| ||||||||||||| ||| ||||||||||| |||||| ||||||||    
T  25347155 aaaatggtttattttatcctatccctttggtgcatcaaacatgagatttaa 25347205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 159
Target Start/End: Original strand, 42683969 - 42684087
Alignment:
Q  41 aatataaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgata 140  Q
    |||| |||||||||| | |||| |||||| |||   |||||  |||||||||||  ||| ||||| ||| | |||||| |||||||| || ||| ||||     
T  42683969 aatagaaattacaaaggaaagtcaggatatgatagaaaaatgatttattttatcttatccctttgatgcttgaaacatgagatttaagcaggatatgatt 42684068  T
Q  141 aatttatcatatcatgtct 159  Q
    ||| |||||||||||||||    
T  42684069 aatgtatcatatcatgtct 42684087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 179
Target Start/End: Original strand, 28457840 - 28457973
Alignment:
Q  46 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaattt 145  Q
    |||||||||| | ||||| |||||||||   ||||| ||||||||||||  ||| ||||||||||| ||||| ||||||||| || ||| |||| ||| |    
T  28457840 aaattacaaaggaaagttgggataagatagaaaaatggtttattttatcatatcactttggtgcatcaaacacaagatttaagcaggatatgattaatgt 28457939  T
Q  146 atcatatcatgtcttcatatcatgactatcaaac 179  Q
    |||||||| ||||| | |||| |||| |||||||    
T  28457940 atcatatcctgtctccctatcctgaccatcaaac 28457973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 21495154 - 21495051
Alignment:
Q  77 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatcatgtcttcatatcatgactatca 176  Q
    ||||| ||||||||||||| |||  |||||||||| |||||| |||||| |||| ||| |||| ||| ||||||||||||||| | |||| |||  ||||    
T  21495154 aaaatcgtttattttatcctatcaatttggtgcatcaaacatgagattt-aacaagatatgattaatatatcatatcatgtctccctatcgtgatcatca 21495056  T
Q  177 aacat 181  Q
    |||||    
T  21495055 aacat 21495051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 46663272 - 46663198
Alignment:
Q  77 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatat 152  Q
    |||||||||||| | |||| |||| |||||||||| ||| || ||||||||||||||| |||||||| ||||||||    
T  46663272 aaaatagtttatat-atcctatctgtttggtgcatcaaatatgagatttaaacatgatatgataaatgtatcatat 46663198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 143 - 180
Target Start/End: Complemental strand, 29181772 - 29181735
Alignment:
Q  143 tttatcatatcatgtcttcatatcatgactatcaaaca 180  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  29181772 tttatcatatcatgtcttcatatcctgactattaaaca 29181735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 46 - 179
Target Start/End: Complemental strand, 33072724 - 33072591
Alignment:
Q  46 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaattt 145  Q
    |||||||||| | || |||||||| |||   ||||| ||||||||||||  ||  ||| ||||||| |||||| | ||||||| | ||| |||| ||| |    
T  33072724 aaattacaaaggaaacttaggatatgataggaaaatggtttattttatcatattccttaggtgcatcaaacatgaaatttaaataggatatgattaatgt 33072625  T
Q  146 atcatatcatgtcttcatatcatgactatcaaac 179  Q
    |||||||  ||||| | |||| ||||||||||||    
T  33072624 atcatattttgtctccctatcctgactatcaaac 33072591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0957 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0957
Description:

Target: scaffold0957; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 1756 - 1674
Alignment:
Q  46 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaa 128  Q
    ||||||||||| ||||||||||||||||   |||||  ||||||| |||| ||||||||||||||  ||||||||||||||||    
T  1756 aaattacaaaaccaagttaggataagatagaaaaatgatttatttcatcctatctctttggtgcaccaaacataagatttaaa 1674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 179
Target Start/End: Complemental strand, 32962156 - 32962023
Alignment:
Q  46 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaattt 145  Q
    |||||||||| | |||| |||||| |||   ||||||||||||||||| | ||| | ||||||||| |||||| |||||||| || ||| |||| ||| |    
T  32962156 aaattacaaaggaaagtcaggatatgataggaaaatagtttattttattctatcccattggtgcatcaaacatgagatttaagcaggatatgattaatgt 32962057  T
Q  146 atcatatcatgtcttcatatcatgactatcaaac 179  Q
    |||||||||| ||| | |||| |||| |||||||    
T  32962056 atcatatcatatctccctatcctgaccatcaaac 32962023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 16456595 - 16456515
Alignment:
Q  47 aattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaa 127  Q
    |||||||||||||| | |||||| ||| | ||||||||||||||||||  ||||||||||||||| |||||| | ||||||    
T  16456595 aattacaaaagcaaatcaggataggataaaaaaatagtttattttatcttatctctttggtgcatcaaacatgatatttaa 16456515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 15268764 - 15268593
Alignment:
Q  8 attaggaaagtttctaacctaacatatatgtaaaatataaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggt 107  Q
    ||||||| | ||||||||| | ||||||  || |||| |||||||||| | ||||  ||||| |||   ||||| ||||||||||||| |||  |||| |    
T  15268764 attaggataatttctaacccagcatatacttagaataaaaattacaaaggaaagtcgggataggataggaaaatggtttattttatcctatccatttgtt 15268665  T
Q  108 gcattaaacataagatttaaacatgatgtgataaatttatcatatcatgtcttcatatcatgactatcaaac 179  Q
    | || |||||| |||||| | || ||| |||| ||| ||||||||| ||||| | |||| |||| |||||||    
T  15268664 gtatcaaacatgagatttcagcaggatatgattaatgtatcatatcctgtctccttatcctgaccatcaaac 15268593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 180
Target Start/End: Complemental strand, 16295442 - 16295304
Alignment:
Q  42 atataaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataa 141  Q
    |||||||||||||| | |||| |||||| |||    |||| ||||||| ||| | |||||||| |||||| |||||| | |||||| || ||| |||| |    
T  16295442 atataaattacaaaggaaagtcaggatatgatagggaaattgtttattgtatgctatctctttagtgcatcaaacatgatatttaagcaggatatgatta 16295343  T
Q  142 atttatcatatcatgtcttcatatcatgactatcaaaca 180  Q
    || |||||||| ||||||   |||| |||| ||||||||    
T  16295342 atgtatcatattatgtctctctatcttgaccatcaaaca 16295304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 180
Target Start/End: Complemental strand, 16303144 - 16303006
Alignment:
Q  42 atataaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataa 141  Q
    |||||||||||||| | |||| |||||| |||    |||| ||||||| ||| | |||||||| |||||| |||||| | |||||| || ||| |||| |    
T  16303144 atataaattacaaaggaaagtcaggatatgatagggaaattgtttattgtatgctatctctttagtgcatcaaacatgatatttaagcaggatatgatta 16303045  T
Q  142 atttatcatatcatgtcttcatatcatgactatcaaaca 180  Q
    || |||||||| ||||||   |||| |||| ||||||||    
T  16303044 atgtatcatattatgtctctctatcttgaccatcaaaca 16303006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 159
Target Start/End: Complemental strand, 37246226 - 37246152
Alignment:
Q  85 ttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatcatgtct 159  Q
    ||||||||||| |||| ||| |||||| |||||| | |||||| || ||| |||| ||| |||||||||||||||    
T  37246226 ttattttatcctatctttttagtgcatcaaacatgatatttaagcaggatatgattaatgtatcatatcatgtct 37246152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 179
Target Start/End: Original strand, 13349562 - 13349695
Alignment:
Q  46 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaattt 145  Q
    |||||||||| | ||||||||| | ||| | || || ||||||||||||| |||  |||||||||| |||||| ||||||||  | ||| | || ||| |    
T  13349562 aaattacaaaggaaagttaggagaggataagaatattgtttattttatcctatccatttggtgcatcaaacatgagatttaagtaggatataattaatgt 13349661  T
Q  146 atcatatcatgtcttcatatcatgactatcaaac 179  Q
    |||||||| ||||||| |||| ||||||||||||    
T  13349662 atcatatcctgtcttcctatcctgactatcaaac 13349695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 41595304 - 41595236
Alignment:
Q  83 gtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcata 151  Q
    ||||||||||||||||||||||||||||| |||||| |||||||| || ||| |||| ||| |||||||    
T  41595304 gtttattttatccaatctctttggtgcatcaaacatgagatttaagcacgatatgattaatgtatcata 41595236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 159
Target Start/End: Complemental strand, 37485701 - 37485588
Alignment:
Q  46 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaattt 145  Q
    |||||||||| | |||| |||||| |||   ||||| ||||||||||||  |||| |||||||||| |||||| |||||||| || ||| |||| ||| |    
T  37485701 aaattacaaaggaaagtcaggatatgataggaaaatggtttattttatcatatctttttggtgcatcaaacatgagatttaagcaggatatgattaatat 37485602  T
Q  146 atcatatcatgtct 159  Q
    || ||||| |||||    
T  37485601 attatatcttgtct 37485588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 40619788 - 40619864
Alignment:
Q  77 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatc 153  Q
    ||||| ||||||||||||  ||| ||||||||||| |||||| |||||||| || ||| |||| ||| |||||||||    
T  40619788 aaaatggtttattttatcatatccctttggtgcatcaaacatgagatttaagcaggatatgattaatgtatcatatc 40619864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 46 - 179
Target Start/End: Original strand, 28622974 - 28623107
Alignment:
Q  46 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaattt 145  Q
    |||||||||| | |||| |||||| |||   ||||||||||||||||| | ||| ||||||||||| ||||||   ||||||| | ||| |||| ||| |    
T  28622974 aaattacaaaggaaagtcaggataggatagaaaaatagtttattttattctatccctttggtgcatcaaacatggaatttaaataggatatgattaatgt 28623073  T
Q  146 atcatatcatgtcttcatatcatgactatcaaac 179  Q
    |||||||||||||| | |||| |||| |||||||    
T  28623074 atcatatcatgtctccctatcctgaccatcaaac 28623107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 37347104 - 37347206
Alignment:
Q  77 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatcatgtcttcatatcatgactatca 176  Q
    ||||| ||||||||||||  ||| ||||||||||| ||||||||||||||| || ||| |||| ||| ||||||||  ||||| | |||| |||| ||||    
T  37347104 aaaatggtttattttatcatatccctttggtgcatcaaacataagatttaagcaagatatgattaatgtatcatattctgtctccctatcctgaccatca 37347203  T
Q  177 aac 179  Q
    |||    
T  37347204 aac 37347206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 153
Target Start/End: Complemental strand, 49549618 - 49549507
Alignment:
Q  42 atataaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataa 141  Q
    |||||||||||||| | |||| |||||| |||    ||||  |||||||||||| ||| ||||||||||| ||| || |||||||| || ||| |||| |    
T  49549618 atataaattacaaaggaaagtcaggatatgatagggaaatgatttattttatcctatccctttggtgcatcaaatatgagatttaagcaggatatgatta 49549519  T
Q  142 atttatcatatc 153  Q
    || |||||||||    
T  49549518 atgtatcatatc 49549507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 46239127 - 46239074
Alignment:
Q  77 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaaca 130  Q
    ||||| ||||||||||||| ||||||||| ||||| | ||||| ||||||||||    
T  46239127 aaaattgtttattttatcctatctctttgatgcatcatacataggatttaaaca 46239074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 48527453 - 48527377
Alignment:
Q  77 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatc 153  Q
    ||||| ||||||||||||  |||| |||| ||||| |||||| | |||||| || ||| |||||||| |||||||||    
T  48527453 aaaattgtttattttatcatatctttttgatgcatcaaacatgaaatttaagcaagatatgataaatatatcatatc 48527377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 77 - 179
Target Start/End: Complemental strand, 12255180 - 12255078
Alignment:
Q  77 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatcatgtcttcatatcatgactatca 176  Q
    ||||| ||||||||||||| ||| ||||||||||| |||||| |||||||| || ||| |||| ||| ||||||||  ||||| | |||| |||| ||||    
T  12255180 aaaatggtttattttatcccatccctttggtgcatcaaacatgagatttaagcaggatatgattaatgtatcatattctgtctccctatcctgaccatca 12255081  T
Q  177 aac 179  Q
    |||    
T  12255080 aac 12255078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 159
Target Start/End: Complemental strand, 23404591 - 23404474
Alignment:
Q  42 atataaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataa 141  Q
    |||||||||||||| | |||| |||||| |||    |||| ||||||||||||| ||||||||||||||| |||||| | |||||  || ||| | || |    
T  23404591 atataaattacaaaggaaagtcaggatatgatatggaaatggtttattttatcctatctctttggtgcatcaaacatgaaatttatgcaggatattatta 23404492  T
Q  142 atttatcatatcatgtct 159  Q
    || |||||||||||||||    
T  23404491 atgtatcatatcatgtct 23404474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Original strand, 29979489 - 29979562
Alignment:
Q  77 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcat 150  Q
    ||||| ||||||||||||  ||| ||||||||||| |||||| ||||||||||||||| |||| ||| ||||||    
T  29979489 aaaatggtttattttatcatatccctttggtgcatcaaacatgagatttaaacatgatatgattaatgtatcat 29979562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 130
Target Start/End: Complemental strand, 32329454 - 32329367
Alignment:
Q  42 atataaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaaca 130  Q
    |||||||||||||| | |||| ||||||||||   ||||| ||||||||||||  ||| ||||||||||| ||||||  ||||||||||    
T  32329454 atataaattacaaaggaaagtcaggataagatatgaaaatggtttattttatcatatc-ctttggtgcatcaaacatgcgatttaaaca 32329367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 12267410 - 12267316
Alignment:
Q  84 tttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatcatgtcttcatatcatgactatcaaa 178  Q
    ||||||| |||  |||| |||||||||| |||||||| ||||||||| ||| | || ||| ||| ||||||||||| |||||  |||| ||||||    
T  12267410 tttatttcatcatatctgtttggtgcatcaaacataaaatttaaacaggatataattaatatataatatcatgtctccatattctgacaatcaaa 12267316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 179
Target Start/End: Complemental strand, 3767798 - 3767703
Alignment:
Q  84 tttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatttatcatatcatgtcttcatatcatgactatcaaac 179  Q
    |||||||||||| ||| ||||||||||| |||||| | |||||| || ||| |||| ||| ||||||||||| ||| | |||| |||| |||||||    
T  3767798 tttattttatcctatcactttggtgcatcaaacatgaaatttaagcaggatatgattaatgtatcatatcatatctccctatcctgaccatcaaac 3767703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 157
Target Start/End: Original strand, 34513815 - 34513926
Alignment:
Q  46 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaattt 145  Q
    |||||||||| | |||| |||||| |||   ||||| ||||||||||||| |||  |||||||||| |||||| |||||||| || ||| | || ||| |    
T  34513815 aaattacaaaggaaagtcaggatatgatagaaaaatggtttattttatcctatccatttggtgcatcaaacatgagatttaagcaggatataattaatgt 34513914  T
Q  146 atcatatcatgt 157  Q
    ||||||||||||    
T  34513915 atcatatcatgt 34513926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 46 - 156
Target Start/End: Original strand, 28115987 - 28116097
Alignment:
Q  46 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaattt 145  Q
    |||||||||| | ||||||||||| |||   ||||| ||||||||||||  ||| ||| ||||||| ||| || |||||||| ||| || |||| ||| |    
T  28115987 aaattacaaaggaaagttaggataggataggaaaatggtttattttatcttatcacttaggtgcatcaaatatgagatttaagcataatatgattaatgt 28116086  T
Q  146 atcatatcatg 156  Q
    |||||||||||    
T  28116087 atcatatcatg 28116097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 17702197 - 17702147
Alignment:
Q  77 aaaatagtttattttatccaatctctttggtgcattaaacataagatttaa 127  Q
    |||| |||||||||||||  ||||||||||||||| |||||| ||||||||    
T  17702197 aaaacagtttattttatcttatctctttggtgcatcaaacatgagatttaa 17702147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 34940391 - 34940309
Alignment:
Q  46 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaa 128  Q
    |||||||||| | |||| |||||| |||   ||||| ||||||||||||| |||  |||||||||| |||||| |||||||||    
T  34940391 aaattacaaaggaaagtcaggataggatatgaaaatggtttattttatcctatccttttggtgcatcaaacatgagatttaaa 34940309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 53923787 - 53923754
Alignment:
Q  78 aaatagtttattttatccaatctctttggtgcat 111  Q
    |||||||||||||||||| |||||||||||||||    
T  53923787 aaatagtttattttatcctatctctttggtgcat 53923754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 4035 - 4132
Alignment:
Q  46 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatt 144  Q
    ||||||||||   |||||||||||||||    |||||||||||||||||| | ||||||||||||| |||||| | |||||| |  ||| |||||||||    
T  4035 aaattacaaagataagttaggataagataggtaaatagtttattttatcc-acctctttggtgcatcaaacatgatatttaagccggatatgataaatt 4132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0662 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0662
Description:

Target: scaffold0662; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 4067 - 3970
Alignment:
Q  46 aaattacaaaagcaagttaggataagattacaaaatagtttattttatccaatctctttggtgcattaaacataagatttaaacatgatgtgataaatt 144  Q
    ||||||||||   |||||||||||||||    |||||||||||||||||| | ||||||||||||| |||||| | |||||| |  ||| |||||||||    
T  4067 aaattacaaagataagttaggataagataggtaaatagtttattttatcc-acctctttggtgcatcaaacatgatatttaagccggatatgataaatt 3970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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