View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_408 (Length: 206)
Name: NF8810A_low_408
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_408 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 20 - 185
Target Start/End: Original strand, 6359103 - 6359268
Alignment:
| Q |
20 |
gaagtcagatccttgagtatatgcagattatcaagaagctatatccatatataaaaggattgagaaactgcaaatcaattgatgcaaacacgagagacat |
119 |
Q |
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| T |
6359103 |
gaagtcagatccttgagtatatgcagattatcaagaagctatatccatatataaaaggattgagaaactgcaaatcaattgatgcaaacacgagagacgt |
6359202 |
T |
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| Q |
120 |
tttgaatttaagctcgtccttgtaattctctctatctactactgttattatttcgttattaaatat |
185 |
Q |
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| T |
6359203 |
tttgaatttaagctcgtccttgtaattctctctatttactactgttattatttcgttattaaatat |
6359268 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 32857358 - 32857285
Alignment:
| Q |
20 |
gaagtcagatccttgagtatatgcagattatcaagaagctatatccatatataaaaggattgagaaactgcaaa |
93 |
Q |
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||||||| |||||||| |||||| ||||| ||| |||||||| ||||| |||||| ||||||||||||||||| |
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| T |
32857358 |
gaagtcaaatccttgactatatgtagattctcatgaagctatttccatccataaaatgattgagaaactgcaaa |
32857285 |
T |
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