View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_41 (Length: 397)
Name: NF8810A_low_41
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 148 - 375
Target Start/End: Complemental strand, 33810968 - 33810741
Alignment:
| Q |
148 |
agtggttggaggtatagagtaaagggatggctcgagatggtagcgttgtccctgctgacccacaggctcttgtgaagaagaagacacagtcttctagaag |
247 |
Q |
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| T |
33810968 |
agtggttggaggtatagggtaaagggatggctcgagatggtagcgttgtccctgctgacccacaggctcttgtgaagaagaagacacagtcttctagaag |
33810869 |
T |
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| Q |
248 |
ctggattgcttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgcatagggttcagattaatgcacgtgatcttagaatc |
347 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33810868 |
ctggattgcttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgcatagggttcagattaatgcacgtgatcttagaatc |
33810769 |
T |
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| Q |
348 |
cttgatcccttgctctcttacccctcta |
375 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
33810768 |
cttgatcccttgctctcttacccctcta |
33810741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 148 - 375
Target Start/End: Complemental strand, 33870437 - 33870210
Alignment:
| Q |
148 |
agtggttggaggtatagagtaaagggatggctcgagatggtagcgttgtccctgctgacccacaggctcttgtgaagaagaagacacagtcttctagaag |
247 |
Q |
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| T |
33870437 |
agtggttggaggtatagggtaaagggatggctcgagatggtagcgttgtccctgctgacccacaggctcttgtgaagaagaagacacagtcttctagaag |
33870338 |
T |
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| Q |
248 |
ctggattgcttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgcatagggttcagattaatgcacgtgatcttagaatc |
347 |
Q |
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| T |
33870337 |
ctggattgcttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgcatagggttcagattaatgcacgtgatcttagaatc |
33870238 |
T |
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| Q |
348 |
cttgatcccttgctctcttacccctcta |
375 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
33870237 |
cttgatcccttgctctcttacccctcta |
33870210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 223 - 374
Target Start/End: Complemental strand, 33831068 - 33830917
Alignment:
| Q |
223 |
agaagaagacacagtcttctagaagctggattgcttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgcatagggttca |
322 |
Q |
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||||||||||||||||||||| ||| |||||| ||||||| ||| |||||||||| | | ||||||||||||||||| ||||||| |||||||||| |
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| T |
33831068 |
agaagaagacacagtcttctacaagttggattcagtttgatgctacaggccaagggtggattcatgatgtggacaagtatgttatcatgaatagggttca |
33830969 |
T |
|
| Q |
323 |
gattaatgcacgtgatcttagaatccttgatcccttgctctcttacccctct |
374 |
Q |
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||| |||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
33830968 |
tattgatgcacgtgatcttagaatccttgatcctttgccctcttacccctct |
33830917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 223 - 374
Target Start/End: Complemental strand, 33893231 - 33893080
Alignment:
| Q |
223 |
agaagaagacacagtcttctagaagctggattgcttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgcatagggttca |
322 |
Q |
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||||||||||||||||||||| ||| |||||| ||||||| ||| |||||||||| | | ||||||||||||||||| ||||||| |||||||||| |
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| T |
33893231 |
agaagaagacacagtcttctacaagttggattcagtttgatgctacaggccaagggtggattcatgatgtggacaagtatgttatcatgaatagggttca |
33893132 |
T |
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| Q |
323 |
gattaatgcacgtgatcttagaatccttgatcccttgctctcttacccctct |
374 |
Q |
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||| |||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
33893131 |
tattgatgcacgtgatcttagaatccttgatcctttgccctcttacccctct |
33893080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 33811107 - 33811043
Alignment:
| Q |
9 |
tggtgtttgatgaaatgtgcaaaagtggtttgtcaaatttcgcttctgttgctcgaattgaatca |
73 |
Q |
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| T |
33811107 |
tggtgtttgatgaaatgtgcaaaagtggtttgtcaaatttcgcttctgttgctcgaattgaatca |
33811043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 9 - 73
Target Start/End: Complemental strand, 33870576 - 33870512
Alignment:
| Q |
9 |
tggtgtttgatgaaatgtgcaaaagtggtttgtcaaatttcgcttctgttgctcgaattgaatca |
73 |
Q |
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| T |
33870576 |
tggtgtttgatgaaatgtgcaaaagtggtttgtcaaatttcgcttctgttgctcgaattgaatca |
33870512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 217 - 372
Target Start/End: Original strand, 24408805 - 24408960
Alignment:
| Q |
217 |
ttgtgaagaagaagacacagtcttctagaagctggattgcttttgatggtactggccaagggtctttgcttgatgtggacaagtatgctatcatgcatag |
316 |
Q |
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|
|||||||||||||||||||||||| | |||||||||||||||| ||| ||| |||||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
24408805 |
ttgtgaagaagaagacacagtcttttggaagctggattgctttggatagtaatggccactggtctcaaattgatgtggacaagtatgctatcatgcatag |
24408904 |
T |
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| Q |
317 |
ggttcagattaatgcacgtgatcttagaatccttgatcccttgctctcttacccct |
372 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
24408905 |
ggttcagattaatgcacatgatcttagaatccttgatcccttgctctcttacccct |
24408960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 286 - 374
Target Start/End: Complemental strand, 24410211 - 24410123
Alignment:
| Q |
286 |
ttgatgtggacaagtatgctatcatgcatagggttcagattaatgcacgtgatcttagaatccttgatcccttgctctcttacccctct |
374 |
Q |
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| T |
24410211 |
ttgatgtggacaagtatgctatcatgcatagggttcagattaatgcatgtgatcttagaatccttgatcccttgctctcttacccctct |
24410123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 24410676 - 24410634
Alignment:
| Q |
217 |
ttgtgaagaagaagacacagtcttctagaagctggattgcttt |
259 |
Q |
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|||||||||||||||||||||||| | |||||||||||||||| |
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| T |
24410676 |
ttgtgaagaagaagacacagtcttttggaagctggattgcttt |
24410634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 196
Target Start/End: Original strand, 24408777 - 24408808
Alignment:
| Q |
165 |
agtaaagggatggctcgagatggtagcgttgt |
196 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
24408777 |
agtaaagggatggctcgagatggtagcgttgt |
24408808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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