View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_410 (Length: 205)

Name: NF8810A_low_410
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_410
NF8810A_low_410
[»] chr2 (18 HSPs)
chr2 (21-190)||(44624829-44624998)
chr2 (41-190)||(44615456-44615605)
chr2 (30-190)||(39153106-39153266)
chr2 (54-182)||(39472763-39472891)
chr2 (30-185)||(39387469-39387624)
chr2 (54-190)||(39138693-39138826)
chr2 (57-190)||(39371164-39371297)
chr2 (30-190)||(39216704-39216864)
chr2 (30-190)||(39396627-39396787)
chr2 (55-184)||(39205742-39205871)
chr2 (30-185)||(39196485-39196640)
chr2 (30-185)||(39413004-39413159)
chr2 (62-184)||(44895114-44895236)
chr2 (57-190)||(39380496-39380629)
chr2 (55-181)||(39478294-39478420)
chr2 (30-185)||(39421161-39421313)
chr2 (55-184)||(39223764-39223893)
chr2 (39-158)||(39188738-39188857)
[»] chr8 (3 HSPs)
chr8 (54-190)||(44730162-44730298)
chr8 (29-190)||(44949869-44950030)
chr8 (32-190)||(45343012-45343170)
[»] chr5 (2 HSPs)
chr5 (29-185)||(17060698-17060854)
chr5 (30-185)||(33562341-33562496)
[»] scaffold0283 (1 HSPs)
scaffold0283 (29-190)||(5849-6010)
[»] chr7 (1 HSPs)
chr7 (54-190)||(19808950-19809083)
[»] chr6 (1 HSPs)
chr6 (127-184)||(16114420-16114477)


Alignment Details
Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 21 - 190
Target Start/End: Complemental strand, 44624998 - 44624829
Alignment:
Q  21 cttgtatccagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacc 120  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  44624998 cttgtatccagcaacagatccaaaaagcttttagacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgagaacc 44624899  T
Q  121 tccaaagaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 190  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44624898 tccaaataattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 44624829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 41 - 190
Target Start/End: Complemental strand, 44615605 - 44615456
Alignment:
Q  41 caaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaagaattttcagtatt 140  Q
    |||||| ||| | |||||||||||||||||| ||| ||  |||||| |||||||| |||||||||||||||||  || |||||||||||||||| |||||    
T  44615605 caaaaatcttgaagacttcatcttcatcaaagtaattaaccaatccgtaaatcgataaaatcaatagaaatccaagagcctccaaagaattttcggtatt 44615506  T
Q  141 ttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 190  Q
    |||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  44615505 ttctttcatgttagctttcaactcacacgctagcttcaacgcttcatctc 44615456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 30 - 190
Target Start/End: Complemental strand, 39153266 - 39153106
Alignment:
Q  30 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaagaa 129  Q
    ||||||| || |||||||||  | ||||||||||| ||| ||| |||||  |||||||||||||||||||| || |||||| ||  ||||| ||||||||    
T  39153266 agcaacaaatgcaaaaagctccaagacttcatctttatcgaaagaagtaaccaatccataaatcgacaaaaccagtagaaaaccaagaaccaccaaagaa 39153167  T
Q  130 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 190  Q
    ||||||||||||||||| || ||||||||||| ||| | || || ||||||||||| ||||    
T  39153166 ttttcagtattttcttttattttagctttcaaatcatgtgcgagtttcaatgcttcttctc 39153106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 54 - 182
Target Start/End: Original strand, 39472763 - 39472891
Alignment:
Q  54 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaagaattttcagtattttctttcatgtta 153  Q
    ||||||||||||||||||| ||||| ||||| ||||||| ||||||| || |||||| ||  ||||  ||||||||||||||||||||||||||||||||    
T  39472763 gacttcatcttcatcaaaagaagtaagcaattcataaattgacaaaagcagtagaaaaccaagaactaccaaagaattttcagtattttctttcatgtta 39472862  T
Q  154 gctttcaactcacgcgctagcttcaatgc 182  Q
     ||||||| ||| | || |||||||||||    
T  39472863 actttcaaatcaagtgcgagcttcaatgc 39472891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 30 - 185
Target Start/End: Original strand, 39387469 - 39387624
Alignment:
Q  30 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaagaa 129  Q
    ||||||| || |||||||||  |  ||||||||||| |||||||||  | |||  |||||||| ||||||| ||  ||||| ||  ||||  ||||||||    
T  39387469 agcaacaaatgcaaaaagctccaaaacttcatcttcgtcaaaataatcaagcagcccataaattgacaaaagcagcagaaaaccaagaacggccaaagaa 39387568  T
Q  130 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 185  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  39387569 ttttcagtattttctttcatgttagcttttaaatcacgcgctagcttcaatgcttc 39387624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 39138826 - 39138693
Alignment:
Q  54 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaagaattttcagtattttctttcatgtta 153  Q
    ||||||||||||||||||||||||| ||||| ||||||  |||||||||| |||||| ||| ||||| ||| |||||||||||||||   ||||||||||    
T  39138826 gacttcatcttcatcaaaataagtaagcaattcataaactgacaaaatcagtagaaaaccgagaaccaccagagaattttcagtatt---tttcatgtta 39138730  T
Q  154 gctttcaactcacgcgctagcttcaatgcttcatctc 190  Q
    |||||||  | | | ||||||||||||||||| ||||    
T  39138729 gctttcagattaagtgctagcttcaatgcttcttctc 39138693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 57 - 190
Target Start/End: Complemental strand, 39371297 - 39371164
Alignment:
Q  57 ttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaagaattttcagtattttctttcatgttagct 156  Q
    |||||||||||||||| |||||  |||||||||| | ||||||| ||||||||| ||  ||||| |||||| ||||| | |||||||||||||||| |||    
T  39371297 ttcatcttcatcaaaagaagtaaccaatccataatttgacaaaagcaatagaaaaccaagaaccaccaaaggatttttactattttctttcatgttggct 39371198  T
Q  157 ttcaactcacgcgctagcttcaatgcttcatctc 190  Q
    ||||  ||| | ||||||||||||||||||||||    
T  39371197 ttcatatcaagtgctagcttcaatgcttcatctc 39371164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 30 - 190
Target Start/End: Complemental strand, 39216864 - 39216704
Alignment:
Q  30 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaagaa 129  Q
    |||||||||| |||||||||  |  |||||||||||| ||||| |||||  |||||||||||| ||||||| ||  ||||| ||| ||||| ||||||||    
T  39216864 agcaacagatgcaaaaagctccaaaacttcatcttcaccaaaagaagtaaccaatccataaattgacaaaagcagaagaaaaccgagaaccaccaaagaa 39216765  T
Q  130 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 190  Q
    |||| |||||||||  ||||||||| |||||| |||   ||||||||||||||||| ||||    
T  39216764 tttttagtattttcactcatgttagatttcaaatcaaatgctagcttcaatgcttcttctc 39216704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 30 - 190
Target Start/End: Original strand, 39396627 - 39396787
Alignment:
Q  30 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaagaa 129  Q
    |||||| ||| |||||||||  |  |||||||||||||| ||| ||||| ||||||||||||| ||||||| ||| | ||| ||  ||||| ||||||||    
T  39396627 agcaaccgatgcaaaaagctccaaaacttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcaacaaaaaaccaagaaccgccaaagaa 39396726  T
Q  130 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 190  Q
    ||||||||||||||| | |||| |||| |||| ||| | |||||||||| |||||| ||||    
T  39396727 ttttcagtattttctctaatgtaagctctcaaatcatgtgctagcttcagtgcttcttctc 39396787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 55 - 184
Target Start/End: Original strand, 39205742 - 39205871
Alignment:
Q  55 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaagaattttcagtattttctttcatgttag 154  Q
    |||||||||| ||||||| ||  | |||||  |||||||||||||| || |||||| ||  ||||| ||| |||||||||||||||||||||||| ||||    
T  39205742 acttcatctttatcaaaagaatcaagcaatttataaatcgacaaaagcagtagaaaaccaagaaccgccatagaattttcagtattttctttcatcttag 39205841  T
Q  155 ctttcaactcacgcgctagcttcaatgctt 184  Q
    ||||||| |||   ||||||||||||||||    
T  39205842 ctttcaagtcaaatgctagcttcaatgctt 39205871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 30 - 185
Target Start/End: Original strand, 39196485 - 39196640
Alignment:
Q  30 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaagaa 129  Q
    ||||||| || |||||||||  |  |||||||||||||||||| ||  | |||||  |||||| ||||||| ||  ||||| ||  ||||| ||||||||    
T  39196485 agcaacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcagcagaaagccaagaaccgccaaagaa 39196584  T
Q  130 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 185  Q
    ||||||||||| || ||||||||||||||||| |||   |||||||||||||||||    
T  39196585 ttttcagtattgtcattcatgttagctttcaaatcaaatgctagcttcaatgcttc 39196640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 30 - 185
Target Start/End: Original strand, 39413004 - 39413159
Alignment:
Q  30 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaagaa 129  Q
    ||||||| || |||||||||  | || |||||||||||| ||| |||||  ||||||| |||  ||||||| ||| ||||| |   ||||| |||||||     
T  39413004 agcaacaaatgcaaaaagctccaagatttcatcttcatccaaaaaagtaaccaatccacaaactgacaaaagcaacagaaaactaagaaccgccaaagag 39413103  T
Q  130 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 185  Q
    ||||| ||||||||||||| |||||||||||| ||| | |||||||||||||||||    
T  39413104 ttttcggtattttctttcaagttagctttcaaatcaagtgctagcttcaatgcttc 39413159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 184
Target Start/End: Original strand, 44895114 - 44895236
Alignment:
Q  62 cttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaagaattttcagtattttctttcatgttagctttcaa 161  Q
    ||||||| ||| |||||  |||||||||||| ||||||| || |||||| ||  ||||| |||||||||||||||||||| |||| ||||||||||| ||    
T  44895114 cttcatcgaaagaagtaatcaatccataaattgacaaaagcagtagaaaaccaagaaccaccaaagaattttcagtatttccttttatgttagctttgaa 44895213  T
Q  162 ctcacgcgctagcttcaatgctt 184  Q
     | | | ||||||||||||||||    
T  44895214 tttatgtgctagcttcaatgctt 44895236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 57 - 190
Target Start/End: Original strand, 39380496 - 39380629
Alignment:
Q  57 ttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaagaattttcagtattttctttcatgttagct 156  Q
    |||||||||||| ||| ||||| ||||||||||||| ||||||| || |||||||||  ||||| ||| ||||| ||||||||| ||| | |||| ||||    
T  39380496 ttcatcttcatcgaaagaagtaagcaatccataaattgacaaaagcagtagaaatccaagaaccgccacagaatcttcagtattctctcttatgtaagct 39380595  T
Q  157 ttcaactcacgcgctagcttcaatgcttcatctc 190  Q
    ||||| ||| | |||||| ||| |||||| ||||    
T  39380596 ttcaaatcaagtgctagcgtcagtgcttcttctc 39380629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 39478294 - 39478420
Alignment:
Q  55 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaagaattttcagtattttctttcatgttag 154  Q
    |||||| |||| || ||| ||||| ||||||||||||| ||||||| || ||||||  |  ||||  || |||||||||||||||||||| | |||| ||    
T  39478294 acttcaccttcttcgaaagaagtaagcaatccataaattgacaaaagcagtagaaaatcaagaactgccgaagaattttcagtattttctctgatgtaag 39478393  T
Q  155 ctttcaactcacgcgctagcttcaatg 181  Q
    ||||||| ||| | |||||||||||||    
T  39478394 ctttcaaatcatgtgctagcttcaatg 39478420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 185
Target Start/End: Original strand, 39421161 - 39421313
Alignment:
Q  30 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaagaa 129  Q
    ||||||| || |||||||||  |  |||||||||||||  |||||||||  ||||   ||||| ||||||| || |||||| ||| |||||   |||  |    
T  39421161 agcaacaaatgcaaaaagctccaacacttcatcttcattgaaataagtaaccaattggtaaattgacaaaagcagtagaaaaccgagaacc---aaatta 39421257  T
Q  130 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 185  Q
    |||||||||||||||| ||| ||||||||||| ||| | || ||||||||||||||    
T  39421258 ttttcagtattttcttccatattagctttcaaatcaagagcgagcttcaatgcttc 39421313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 184
Target Start/End: Complemental strand, 39223893 - 39223764
Alignment:
Q  55 acttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaagaattttcagtattttctttcatgttag 154  Q
    |||||||||||||||||  ||  | |||||  |||||| ||||||| ||  ||||| ||  ||||| ||||||| ||||||||||| |||||||||||      
T  39223893 acttcatcttcatcaaatgaatcaagcaatttataaattgacaaaagcagcagaaaaccaagaaccgccaaagatttttcagtattgtctttcatgtttt 39223794  T
Q  155 ctttcaactcacgcgctagcttcaatgctt 184  Q
    |||| || |||   ||||||||||||||||    
T  39223793 cttttaaatcatatgctagcttcaatgctt 39223764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 39 - 158
Target Start/End: Original strand, 39188738 - 39188857
Alignment:
Q  39 tccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaagaattttcagta 138  Q
    ||||||||||||||  || ||||||||||  ||| ||| |  ||| |||||||| || | ||  | |||||| ||  ||||| ||||||||||| || ||    
T  39188738 tccaaaaagctttaaaacatcatcttcattgaaagaaggaaccaaaccataaattgatagaaggagtagaaaaccaagaaccaccaaagaatttccatta 39188837  T
Q  139 ttttctttcatgttagcttt 158  Q
    ||||||||||||||||||||    
T  39188838 ttttctttcatgttagcttt 39188857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 44730298 - 44730162
Alignment:
Q  54 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaagaattttcagtattttctttcatgtta 153  Q
    |||||||||| ||||||| |||||| |||||| |||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||    
T  44730298 gacttcatctccatcaaagtaagtaagcaatctataaatcgtcaaaatcaatagaaatccgagaacctcctaagaattttcagtattttcttttatgtta 44730199  T
Q  154 gctttcaactcacgcgctagcttcaatgcttcatctc 190  Q
    |||||||||||| | ||||||||||| ||||||||||    
T  44730198 gctttcaactcatgtgctagcttcaaagcttcatctc 44730162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 44949869 - 44950030
Alignment:
Q  29 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaaga 128  Q
    ||||||||||| || |||||||   ||| ||||||  |||||| |||||| |||||||||||||||  | |||||||||||||| | |||||||||||||    
T  44949869 cagcaacagatgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaaga 44949968  T
Q  129 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 190  Q
    ||||| |||||||||||| || |||  |||||||||| | ||||||||||| ||||||||||    
T  44949969 atttttagtattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctc 44950030  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 32 - 190
Target Start/End: Complemental strand, 45343170 - 45343012
Alignment:
Q  32 caacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaagaatt 131  Q
    |||||||| |||||||||  | ||||||||||| ||||||| ||||| ||||| ||| ||| |||||||||| |||||| ||  |||| | ||| || ||    
T  45343170 caacagatacaaaaagctccaagacttcatctttatcaaaagaagtaagcaatacatgaattgacaaaatcagtagaaaaccaagaacgttcaatgattt 45343071  T
Q  132 ttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 190  Q
    |||||||||| |||||| |||||||||||||||| | |||||||| |||||||| ||||    
T  45343070 ttcagtatttcctttcacgttagctttcaactcaagtgctagcttgaatgcttcttctc 45343012  T

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Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 185
Target Start/End: Complemental strand, 17060854 - 17060698
Alignment:
Q  29 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaaga 128  Q
    ||||||||||| ||||||| |  | ||||||||||| |||||||||||||  ||||||||||| |||||| ||||| ||||||||| |||||||||| ||    
T  17060854 cagcaacagatgcaaaaagatccaagacttcatcttgatcaaaataagtaaacaatccataaaccgacaagatcaacagaaatccgagaacctccaatga 17060755  T
Q  129 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 185  Q
    || |||||||||| |||| |||||||||||||||||| | ||||||||||| |||||    
T  17060754 atattcagtatttgcttttatgttagctttcaactcatgtgctagcttcaaagcttc 17060698  T

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Target: chr5; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 185
Target Start/End: Complemental strand, 33562496 - 33562341
Alignment:
Q  30 agcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaagaa 129  Q
    ||||||| || |||||||||  |  |||||||||||||||||| ||  | |||||  |||||| ||||||| ||  ||||| ||  ||||| ||||| ||    
T  33562496 agcaacaaatgcaaaaagctccaaaacttcatcttcatcaaaagaatcaagcaatttataaattgacaaaagcatcagaaaaccaagaaccgccaaaaaa 33562397  T
Q  130 ttttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttc 185  Q
      |||||||||||||||||||||||||||||| |||   |||||||||||||||||    
T  33562396 aattcagtattttctttcatgttagctttcaaatcaaatgctagcttcaatgcttc 33562341  T

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Target: scaffold0283 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 29 - 190
Target Start/End: Original strand, 5849 - 6010
Alignment:
Q  29 cagcaacagatccaaaaagctttatgacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaaga 128  Q
    ||||||||||| || |||||||   ||| ||||||  |||||| |||||| |||||||||||||||  | |||||||||||||| | |||||||||||||    
T  5849 cagcaacagatgcataaagcttagagacatcatctcgatcaaagtaagtaagcaatccataaatcgttataatcaatagaaatctgagaacctccaaaga 5948  T
Q  129 attttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgcttcatctc 190  Q
    ||||| |||||||||||| || |||  |||||||||| | ||||||||||| ||||||||||    
T  5949 atttttagtattttcttttattttaaatttcaactcatgtgctagcttcaaagcttcatctc 6010  T

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Target: chr7 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 19809083 - 19808950
Alignment:
Q  54 gacttcatcttcatcaaaataagtatgcaatccataaatcgacaaaatcaatagaaatccgggaacctccaaagaattttcagtattttctttcatgtta 153  Q
    ||||||||||||||||||||||||| ||||| ||||||  ||||||| || |||||| ||  ||||| ||| ||||||||||||| |   ||||||||||    
T  19809083 gacttcatcttcatcaaaataagtaagcaattcataaactgacaaaagcagtagaaaaccaagaaccaccagagaattttcagtact---tttcatgtta 19808987  T
Q  154 gctttcaactcacgcgctagcttcaatgcttcatctc 190  Q
    |||||||| ||| | ||||||||||||| ||| ||||    
T  19808986 gctttcaaatcaagtgctagcttcaatgtttcttctc 19808950  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 16114477 - 16114420
Alignment:
Q  127 gaattttcagtattttctttcatgttagctttcaactcacgcgctagcttcaatgctt 184  Q
    ||||||| |||||| ||| |||||| ||||||||| || |||||||||||||||||||    
T  16114477 gaatttttagtattctctctcatgtaagctttcaaatcgcgcgctagcttcaatgctt 16114420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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