View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_413 (Length: 204)
Name: NF8810A_low_413
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_413 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 6e-70; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 4160101 - 4160258
Alignment:
| Q |
14 |
gaatcagttgtggatgttggttgtggaaatggaacaactggtaagattatttgtgagacattttctaagttgaaatgtgttgtttttgatcgtccaaagg |
113 |
Q |
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| T |
4160101 |
gaatcaattgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacatttcctaagttgacttgtgttgtttttgatcgtccaaagg |
4160200 |
T |
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| Q |
114 |
ttgtagagaatttatgtggaaataacaatttgacatatgttggtggggacatgttcat |
171 |
Q |
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| T |
4160201 |
ttgtagagaatttatgtggaagtaacaatttgacatatgttggtggggacatgttcat |
4160258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 21 - 171
Target Start/End: Complemental strand, 4171894 - 4171744
Alignment:
| Q |
21 |
ttgtggatgttggttgtggaaatggaacaactggtaagattatttgtgagacattttctaagttgaaatgtgttgtttttgatcgtccaaaggttgtaga |
120 |
Q |
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| T |
4171894 |
ttgtggatgttggtggtggaaatggaacaactggtaagattatttgtgagacatatcctaagttgagatgtgttgtttttgatcgtccaaaggttgtaga |
4171795 |
T |
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| Q |
121 |
gaatttatgtggaaataacaatttgacatatgttggtggggacatgttcat |
171 |
Q |
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| T |
4171794 |
gaatttatgtggaagtaacaatttgacatatgtcggtggggacatgttcat |
4171744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 170
Target Start/End: Complemental strand, 4177524 - 4177368
Alignment:
| Q |
14 |
gaatcagttgtggatgttggttgtggaaatggaacaactggtaagattatttgtgagacattttctaagttgaaatgtgttgtttttgatcgtccaaagg |
113 |
Q |
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| T |
4177524 |
gaatcaattgtggatgttggtggtggaaatggaaccactggtaaaattatttgtgagacttttcctaagttgaaatgtattgtgtttgataggccacaag |
4177425 |
T |
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| Q |
114 |
ttgtagagaatttatgtggaaataacaatttgacatatgttggtggggacatgttca |
170 |
Q |
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| T |
4177424 |
ttgtagagaacttatctggaagcaataatttgacttatgttggtggggacatgttca |
4177368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 119
Target Start/End: Original strand, 34343597 - 34343695
Alignment:
| Q |
21 |
ttgtggatgttggttgtggaaatggaacaactggtaagattatttgtgagacattttctaagttgaaatgtgttgtttttgatcgtccaaaggttgtag |
119 |
Q |
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| T |
34343597 |
ttgtggatgttggtggtggaactggaaccacagctagaattatatgtgaggcttttcctaagttgaaatgtgttgtttatgatcttccacaggttgtag |
34343695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 34330980 - 34331071
Alignment:
| Q |
11 |
atagaatcagttgtggatgttggttgtggaaatggaacaactggtaagattatttgtgagacattttctaagttgaaatgtgttgtttttga |
102 |
Q |
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| T |
34330980 |
atagaatctattgtggatgttggtggtggaaatggaacgacggctaaaattatatgtgaggcttttcctaaggtcaaatgtcttgtttttga |
34331071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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