View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8810A_low_415 (Length: 203)
Name: NF8810A_low_415
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_415 |
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| [»] chr8 (16 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 183; Significance: 3e-99; HSPs: 16)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 2 - 203
Target Start/End: Original strand, 15608383 - 15608585
Alignment:
| Q |
2 |
gttcagccgccattgctgtctttttggctaaaagaaatctaaacctaatctttgagtttgaatgccaacgtc-atctcgtttgttggttccatataaacg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| ||||| |
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| T |
15608383 |
gttcagccgccattgctgtctttttggctaaaagaaatctaaacctaatctttgagtttgaatgccaccatcgatctcgtttgttggttccataaaaacg |
15608482 |
T |
|
| Q |
101 |
gtactaaaaaattatcatttacatggttgctgtttcagtttaaatcatttacgacttcacattttgctgctgactttgttttgcttttctgattggcaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15608483 |
gtactaaaaaattatcatttacatggttgctgtttcagtttaaatcatttacgacttcacattttgctgctgactttgttttgcttttctgattggcaag |
15608582 |
T |
|
| Q |
201 |
taa |
203 |
Q |
| |
|
||| |
|
|
| T |
15608583 |
taa |
15608585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 2 - 203
Target Start/End: Original strand, 15616897 - 15617099
Alignment:
| Q |
2 |
gttcagccgccattgctgtctttttggctaaaagaaatctaaacctaatctttgagtttgaatgccaacgtc-atctcgtttgttggttccatataaacg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || | || ||||||||||||||||||||| ||||| |
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| T |
15616897 |
gttcagccgccattgctgtctttttggctaaaagatatctaaacctaatctttgagtttgaatgacaccatcgatctcgtttgttggttccataaaaacg |
15616996 |
T |
|
| Q |
101 |
gtactaaaaaattatcatttacatggttgctgtttcagtttaaatcatttacgacttcacattttgctgctgactttgttttgcttttctgattggcaag |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15616997 |
gtactaaaaaattatcatttacatggttgctgtttcagtttaaatcatttacgacttcacattttgctgctgactttgttttgcttttctgattggcaag |
15617096 |
T |
|
| Q |
201 |
taa |
203 |
Q |
| |
|
||| |
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|
| T |
15617097 |
taa |
15617099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 2 - 203
Target Start/End: Original strand, 15626477 - 15626679
Alignment:
| Q |
2 |
gttcagccgccattgctgtctttttggctaaaagaaatctaaacctaatctttgagtttgaatgccaacgtc-atctcgtttgttggttccatataaacg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| ||| | |
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| T |
15626477 |
gttcagccgccattgctgtctttttggctaaaagaaatctaaacctaatctttgagtttgaatgccaccatcgatctcgtttgttggttccataaaaatg |
15626576 |
T |
|
| Q |
101 |
gtactaaaaaattatcatttacatggttgctgtttcagtttaaatcatttacgacttcacattttgctgctgactttgttttgcttttctgattggcaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15626577 |
gtactaaaaaattatcatttacatggttgttgtttcagtttaaatcatttacgacttcaaattttgctgctgactttgttttgcttttctgattggcaag |
15626676 |
T |
|
| Q |
201 |
taa |
203 |
Q |
| |
|
||| |
|
|
| T |
15626677 |
taa |
15626679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 2 - 203
Target Start/End: Original strand, 15650234 - 15650436
Alignment:
| Q |
2 |
gttcagccgccattgctgtctttttggctaaaagaaatctaaacctaatctttgagtttgaatgccaacgtc-atctcgtttgttggttccatataaacg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||| ||||| |
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| T |
15650234 |
gttcagccgccattgctgtctttttggctaaaagaaatctaaacctaatctttgagtttgaatgccaccatcgatctcgtttgttggttccataaaaacg |
15650333 |
T |
|
| Q |
101 |
gtactaaaaaattatcatttacatggttgctgtttcagtttaaatcatttacgacttcacattttgctgctgactttgttttgcttttctgattggcaag |
200 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15650334 |
gtactaaaaaattatcatttatattgttgctgttttagtttaaatcatttacgacttcaaattttgctgctgactttgttttgcttttctgattggcaag |
15650433 |
T |
|
| Q |
201 |
taa |
203 |
Q |
| |
|
||| |
|
|
| T |
15650434 |
taa |
15650436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 2 - 157
Target Start/End: Original strand, 15640089 - 15640245
Alignment:
| Q |
2 |
gttcagccgccattgctgtctttttggctaaaagaaatctaaacctaatctttgagtttgaatgccaacgtc-atctcgtttgttggttccatataaacg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || | || ||||||||||||||||||||| ||||| |
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| T |
15640089 |
gttcagccgccattgctgtctttttggctaaaagatatctaaacctaatctttgagtttgaatggcaccatcgatctcgtttgttggttccataaaaacg |
15640188 |
T |
|
| Q |
101 |
gtactaaaaaattatcatttacatggttgctgtttcagtttaaatcatttacgactt |
157 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15640189 |
gtactaaaaaattatcatttacatggttgctgtttcagtttaaatcatttacgactt |
15640245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 15652195 - 15652321
Alignment:
| Q |
2 |
gttcagccgccattgctgtctttttggctaaaagaaatctaaacctaatctttgagtttgaatgccaacgtc-atctcgtttgttggttccatataaacg |
100 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||| |
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| T |
15652195 |
gttcagccgccattgctttctttttggccaaaagaaatctaaacctaatctttgagtttgaatgccaccgtcgatctcgtttgttggttccataaaaacg |
15652294 |
T |
|
| Q |
101 |
gtactaaaaaattatcatttacatggt |
127 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
15652295 |
gtactaaaaaattatcatttacatggt |
15652321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 74 - 203
Target Start/End: Original strand, 15628452 - 15628588
Alignment:
| Q |
74 |
atctcgtttgttggttccatataaacggtactaaaaaattatcatttac--------atggttgctgtttcagtttaaatcatttacgacttcacatttt |
165 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15628452 |
atctcgtttgttggttccataaaaacggtactaaaaaattatcatttacgacttcacatt-ttgctgtttcagtttaaatcatttacgacttcacatttt |
15628550 |
T |
|
| Q |
166 |
gctgctgactttgttttgcttttctgattggcaagtaa |
203 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
15628551 |
gctgcttactttgttttgcttttctaattggcaagtaa |
15628588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 131 - 203
Target Start/End: Original strand, 15652358 - 15652430
Alignment:
| Q |
131 |
tgtttcagtttaaatcatttacgacttcacattttgctgctgactttgttttgcttttctgattggcaagtaa |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15652358 |
tgtttcagtttaaatcatttacgacttcacattttgctgctgactttgttttgcttttctgattggcaagtaa |
15652430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 12063488 - 12063388
Alignment:
| Q |
103 |
actaaaaaattatcatttacatggttgctgtttcagtttaaatcatttacgacttcacattttgctgctgactttgttttgcttttctgattggcaagta |
202 |
Q |
| |
|
|||| ||||||||||| ||||||||||||| ||||||||| ||||||| || |||||||||||||||| ||||| |||||||||||||||||||||||| |
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|
| T |
12063488 |
actataaaattatcatgcacatggttgctgtctcagtttaattcatttaagagttcacattttgctgctaacttttttttgcttttctgattggcaagta |
12063389 |
T |
|
| Q |
203 |
a |
203 |
Q |
| |
|
| |
|
|
| T |
12063388 |
a |
12063388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 114 - 196
Target Start/End: Complemental strand, 12068172 - 12068090
Alignment:
| Q |
114 |
atcatttacatggttgctgtttcagtttaaatcatttacgacttcacattttgctgctgactttgttttgcttttctgattgg |
196 |
Q |
| |
|
||||||||||| ||||| |||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
12068172 |
atcatttacattgttgcagtttcagtttaattcatttacgagttcacattttactgctgactttgttttgcttttctgattgg |
12068090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 15995566 - 15995455
Alignment:
| Q |
2 |
gttcagccgccattgctgtctttttggctaaaagaaatctaaacctaatctttgagtttgaatgccaacgtc-atctcgtttgttggttccatataaacg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | |||| || | ||||||||||||| || ||||| |
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|
| T |
15995566 |
gttcagccgccattgctgtctttttggctaaaaaaaatctaaacctaatctaggagtttgaatgtcgccgtcaatgtagtttgttggttccgtaaaaacg |
15995467 |
T |
|
| Q |
101 |
gtactaaaaaat |
112 |
Q |
| |
|
|||| ||||||| |
|
|
| T |
15995466 |
gtaccaaaaaat |
15995455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 108 - 199
Target Start/End: Complemental strand, 15971856 - 15971765
Alignment:
| Q |
108 |
aaaattatcatttacatggttgctgtttcagtttaaatcatttacgacttcacattttgctgctgactttgttttgcttttctgattggcaa |
199 |
Q |
| |
|
||||| |||||||||| |||| |||||||||||||| |||||||||| ||| ||||||| |||||| || |||| ||||||||||||||| |
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|
| T |
15971856 |
aaaatgatcatttacaaggtttctgtttcagtttaattcatttacgagttcgcattttgttgctgatttcgtttgcattttctgattggcaa |
15971765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 203
Target Start/End: Complemental strand, 15995330 - 15995283
Alignment:
| Q |
156 |
ttcacattttgctgctgactttgttttgcttttctgattggcaagtaa |
203 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
15995330 |
ttcaaattttgctgctgactttgttttgcttttctgagtagcaagtaa |
15995283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 15628420 - 15628452
Alignment:
| Q |
2 |
gttcagccgccattgctgtctttttggctaaaa |
34 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
15628420 |
gttcagccgccattgctgtctttttggctaaaa |
15628452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 15640245 - 15640277
Alignment:
| Q |
171 |
tgactttgttttgcttttctgattggcaagtaa |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
15640245 |
tgactttgttttgcttttctgattggcaagtaa |
15640277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 15972037 - 15971980
Alignment:
| Q |
3 |
ttcagccgccattgctgtctttttggctaaaagaaatctaaacctaatctttgagtttg |
61 |
Q |
| |
|
|||||||| |||| ||||||||||||||| || || ||||||||||||||| ||||||| |
|
|
| T |
15972037 |
ttcagccgtcatttctgtctttttggctacaa-aagtctaaacctaatcttggagtttg |
15971980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 2660348 - 2660397
Alignment:
| Q |
18 |
tgtctttttggctaaaagaaa-tctaaacctaatctttgagtttgaatgc |
66 |
Q |
| |
|
|||| |||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
2660348 |
tgtcattttggctaaaacaaaatctaaacctaatctttgagtttgaatgc |
2660397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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