View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8810A_low_417 (Length: 202)
Name: NF8810A_low_417
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_417 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 24 - 190
Target Start/End: Complemental strand, 1744343 - 1744177
Alignment:
| Q |
24 |
gtttcctttattgttgttatttggaaaacaagatgatgaaccaacttgcatagtgctaaaagatttgtgctccgacaccttggatctatgaatcaaatca |
123 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1744343 |
gtttcctttattgttgttatttggaaaacaagatgatgaaccaacttgcatagtgctaaaagatttgtgctccgacaccttggatctgtgaatcaaatca |
1744244 |
T |
|
| Q |
124 |
tctttagacagtttcacgaaatcaacaggcttgttgaaatttgagtttgaggatggatattcttcga |
190 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| || ||||| |
|
|
| T |
1744243 |
tctttagacagtttcacgaaatcaataggcttgttgagatttgagtttgaggatggatcttgttcga |
1744177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 1738996 - 1738843
Alignment:
| Q |
28 |
cctttattgttgttatttggaaaacaagatgatgaaccaacttgcatagtgctaaaagatttgtgctccgacaccttggatctatgaatcaaatcatctt |
127 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||| | |||||| |||| |||| |
|
|
| T |
1738996 |
cctttattgttgttatttggaaaacgagatgatgaaccaacttgcatagtgctaaaaggtttgtgctctgacaccttggacatgtgaatcgaatcctctt |
1738897 |
T |
|
| Q |
128 |
tagacagtttcacgaaatcaacaggcttgttgaaatttgagtttgaggatggat |
181 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||||||||| |||||||| ||||||| |
|
|
| T |
1738896 |
tagatagtttcacaaaatcaagaggcttgttgaaattagagtttgaagatggat |
1738843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 1760035 - 1759999
Alignment:
| Q |
34 |
ttgttgttatttggaaaacaagatgatgaaccaactt |
70 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1760035 |
ttgttgttatttggaaaaccagatgatgaaccaactt |
1759999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 190
Target Start/End: Complemental strand, 1724323 - 1724247
Alignment:
| Q |
114 |
aatcaaatcatctttagacagtttcacgaaatcaacaggcttgttgaaatttgagtttgaggatggatattcttcga |
190 |
Q |
| |
|
|||| |||||||||| || || ||||| ||||| |||||||||| |||| |||||||||||||||| || ||||| |
|
|
| T |
1724323 |
aatcgaatcatcttttgatagcttcacataatcactaggcttgttggaattcgagtttgaggatggatcttgttcga |
1724247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University