View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_42 (Length: 397)
Name: NF8810A_low_42
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_42 |
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Alignment Details
Target: chr6 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 21 - 379
Target Start/End: Original strand, 30778396 - 30778754
Alignment:
| Q |
21 |
atcaaaagctaagttgcaatttttgcttgtccaccgatgatgaaaatcaaaggctaagttgttaattttcgattgtaaccatctaaaagaagaaaacttc |
120 |
Q |
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| T |
30778396 |
atcaaaagctacgttgcaatttttgcttgtccaccgatgatgaaaatcaaaagctaagttgttaattttcggttgtaaccatctaaaagaagaaaatttc |
30778495 |
T |
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| Q |
121 |
acgatgttcaccggttgctgtatcgattgatctatatgtcgaaaaatacgactattcttgtccttccaaac-tcttaaacaaccgacaactaaatcacat |
219 |
Q |
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| T |
30778496 |
acgatattcaccggttgttgtatcgattg-tctatatgtcgaaaaatacgactattcttatccttccaaatatcttaaacaaccgacaactaaatcacat |
30778594 |
T |
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| Q |
220 |
ggagacgtcttcttccacggttaccctagcctatcaatcccccatgctagcctcctaatctccactaaggtaacatctttatcaaacgtaaatcaaaaag |
319 |
Q |
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|||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | |
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| T |
30778595 |
ggagacgtcttcttccaccgctatcctagcctatcaatcccccatgctagcctcctaatctccactaaggtaacacctttatcaaacgtaaatcaaaagg |
30778694 |
T |
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| Q |
320 |
acgccaaaacctaacccacaaacttgcaccatgcagtcaaagatcacaccaaaatgatgt |
379 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
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| T |
30778695 |
acgccaaaacctaacccacaaaccttcaccatgcagtcaaagatcacaccaaaatgatgt |
30778754 |
T |
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