View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_421 (Length: 201)
Name: NF8810A_low_421
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_421 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 27623833 - 27623999
Alignment:
| Q |
21 |
aatgatgctgtgaatcctaaacctggtactttaagatatgcagttatacaaaatgaaccactttggattgtgtttccaagtaacatgatgattaagttgt |
120 |
Q |
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| T |
27623833 |
aatgatgctgtgaatcctaaacctggtactttaagatatgcagttatacaaaatgaaccactttggattgtgtttccaagtaacatgatgattaagttgt |
27623932 |
T |
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| Q |
121 |
ctcaagagcttatttttagtagcttcaaaaccattgatggtcgtggtgctgatgttcatattcttgg |
187 |
Q |
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| T |
27623933 |
ctcaagagcttatttttaatagcttcaaaaccattgatggtcgtggtgctgatgttcatattgttgg |
27623999 |
T |
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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 178
Target Start/End: Complemental strand, 41365993 - 41365837
Alignment:
| Q |
22 |
atgatgctgtgaatcctaaacctggtactttaagatatgcagttatacaaaatgaaccactttggattgtgtttccaagtaacatgatgattaagttgtc |
121 |
Q |
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| T |
41365993 |
atgatgctgttaccccaaaaccaggtacattaagatatggtgtgataaaaaatgaaccattgtggatagtgttccctagtaacatgatgattaagctgaa |
41365894 |
T |
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| Q |
122 |
tcaagagcttatttttagtagcttcaaaaccattgatggtcgtggtgctgatgttca |
178 |
Q |
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| T |
41365893 |
gcaagagcttatatttaatagttataagactattgacggacgtggagctgatgttca |
41365837 |
T |
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