View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_43 (Length: 396)
Name: NF8810A_low_43
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_43 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Original strand, 4796677 - 4797057
Alignment:
| Q |
16 |
acatcaattgatgaaatggttgaaaagtacaatgataaaaatgaaaagcaggaaatatagatatccaaatatgcaaacacagagacattgagttccacca |
115 |
Q |
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| T |
4796677 |
acatcaattgatgaaatggttgaaaagtacaatgataaaaatgaaaagcaagtaatatagatatccaaatatgcaaacacagagtcattgagttccacca |
4796776 |
T |
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| Q |
116 |
aaacttttcacataaataaacaggccagtgattaagagaattattaactcagaaaaccagaaactaaataaaatatgaaacaacaaacaaatatcaaact |
215 |
Q |
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| T |
4796777 |
aaacttttcacataaataaacaggccagtgattaagagaattattcactcagaaaaccagaaactaaataaaatatgaaacaacaaacaaatatcaaact |
4796876 |
T |
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| Q |
216 |
tctaatagattgttcctagttaaaaactagttcacagaagtcacgaatttccaattgattgaaaaccgcaaataaaattaaattccaaatctaacacatc |
315 |
Q |
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| T |
4796877 |
tctaataaattgttcctagttaaaaactagttcacagaagtcacgaatttccaattgattgaaaaccgcaaataaaattaaattccaaatctaacacatc |
4796976 |
T |
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| Q |
316 |
ttcatttatggcgaggagaggtgtcaccaccggtgtttacgaagatgtcaataatcgcttgatgccggtcttctgctctga |
396 |
Q |
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| T |
4796977 |
ttcatttatggcgaggagaggtgccacaacccgtgtttacgaagatgtcaataatcgcttgatgccggtcttctgctctga |
4797057 |
T |
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