View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_45 (Length: 391)
Name: NF8810A_low_45
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 21 - 379
Target Start/End: Original strand, 51960933 - 51961295
Alignment:
| Q |
21 |
actacactgttgcatgtcaccagaaattgacacttaaacaagaagttgaaggtttttgctcaaagtgaagaatcttcttcggtgtatatgacgaaattat |
120 |
Q |
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| T |
51960933 |
actacactgttgcatgtcaccagaaattgacacttaaacaagaagttgaaggtttttgctcaaagtgaagaatcttcttcggtgtatatgacgaaattat |
51961032 |
T |
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| Q |
121 |
gtgtctaatagatttagactttgagacaaaagagtagaatctgcttccgtgatctaggagaggatggaaagctacgcctttaatttaagcagagtctttc |
220 |
Q |
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| T |
51961033 |
gtgtctaatagatttagactttgagacaaaagagtagaatctgcttccgtgatctaggagaggatggaaagctacacctttaatttaaccagagtctttc |
51961132 |
T |
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| Q |
221 |
ttagtgacagaaca----acatcgatccttttgtaatgatgtaaatttattactttctcaaggatttggattttgttatttacaactcgagcatagtact |
316 |
Q |
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| T |
51961133 |
ttattgatagagcaacgtacatcgatccttttgtaatgatgtaaatttattactttctcaaggatttggattttcttatttacaactcgagcatagtact |
51961232 |
T |
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| Q |
317 |
atagtgatagagtcacaacattcaaacgtgtgatataacatcattgaacaaccatgcaatatt |
379 |
Q |
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| T |
51961233 |
atagtgatagagtcacaacattcaaacatgtgatataacatcattgaacaaccatgcaatatt |
51961295 |
T |
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