View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_46 (Length: 386)
Name: NF8810A_low_46
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 35 - 371
Target Start/End: Complemental strand, 4179026 - 4178690
Alignment:
| Q |
35 |
tatgtggtgcatcatgcttcctgctaaactttacagatagcataagagacagcaaggggaatatttgttatgggtttgccaccttcaagggcttgtgggt |
134 |
Q |
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| T |
4179026 |
tatgtggtgcatcatgcttcctgctaaactttacagatagcataagagacagcaaggggaatatttgttatgggtttgccaccttcaagggcttgtgggt |
4178927 |
T |
|
| Q |
135 |
tattgacggatcaaccaaacttccacctcaagttgctgcaaaatatcgcataaagtttatagatttcatgcatgcaatgatgtcaattctggtgtttgca |
234 |
Q |
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| T |
4178926 |
tattgatggatcaaccaaacttccacctcaagttgctgcaaaatatcgcataaagtttatagatttcatgcatgcgatgatgtcaattctggtgtttgca |
4178827 |
T |
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| Q |
235 |
gcaattgcattgtttgatcagaatgtggtgaattgcttttttccagaaccatcaaaagagatacaagaaatcctcacggcgttgcctgtggcaattggcg |
334 |
Q |
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| T |
4178826 |
gcaattgcattgtttgatcagaatgtggtgaattgcttttttccagaaccatcaaaagagatacaagaaatcctcacggcgttgcctgtggcaattggcg |
4178727 |
T |
|
| Q |
335 |
ttttttgcagcatgcttttcgttgcatttcctactga |
371 |
Q |
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| T |
4178726 |
ttttttgcagcatgcttttcgttgcatttcctactga |
4178690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 37 - 368
Target Start/End: Complemental strand, 4168097 - 4167766
Alignment:
| Q |
37 |
tgtggtgcatcatgcttcctgctaaactttacagatagcataagagacagcaaggggaatatttgttatgggtttgccaccttcaagggcttgtgggtta |
136 |
Q |
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| T |
4168097 |
tgtggtgcatcatgctttctgctaagctttactgatagctttagagacagcaagggtaatattatttatgggtttgccacctttaagggcttgtgggtta |
4167998 |
T |
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| Q |
137 |
ttgacggatcaaccaaacttccacctcaagttgctgcaaaatatcgcataaagtttatagatttcatgcatgcaatgatgtcaattctggtgtttgcagc |
236 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||| ||||||||| | ||||||||||||||||||||||| |
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| T |
4167997 |
ttgatggatcaaccaaacttccacctcaagttgctgctaaataccgcatacggtttatagattttatgcatgcagtaatgtcaattctggtgtttgcagc |
4167898 |
T |
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| Q |
237 |
aattgcattgtttgatcagaatgtggtgaattgcttttttccagaaccatcaaaagagatacaagaaatcctcacggcgttgcctgtggcaattggcgtt |
336 |
Q |
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| T |
4167897 |
aattgcattgtttgatcggaatgtggtgaattgcttttttccagaaccatcaaaagagatacaagaaatcctcacggcgttgcctgtggcaattggcgat |
4167798 |
T |
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| Q |
337 |
ttttgcagcatgcttttcgttgcatttcctac |
368 |
Q |
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| T |
4167797 |
ttttgcagcatgcttttcgttacatttcctac |
4167766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 35 - 369
Target Start/End: Original strand, 34944371 - 34944705
Alignment:
| Q |
35 |
tatgtggtgcatcatgcttcctgctaaactttacagatagcataagagacagcaaggggaatatttgttatgggtttgccaccttcaagggcttgtgggt |
134 |
Q |
| |
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|||||||||| ||||||||||| ||| ||| || |||||| | | ||||| || ||||| || |||||||| |||||||| || || ||||| ||| | |
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| T |
34944371 |
tatgtggtgcctcatgcttcctactatgcttcactgatagcttcaaagacaataaagggaacatatgttatggatttgccacatttaaaggcttatggat |
34944470 |
T |
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| Q |
135 |
tattgacggatcaaccaaacttccacctcaagttgctgcaaaatatcgcataaagtttatagatttcatgcatgcaatgatgtcaattctggtgtttgca |
234 |
Q |
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||||| |||||| | | |||||||| | || ||| ||||||||||| ||| ||| || ||||||||||||||||| ||||||||| |||| ||| || |
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| T |
34944471 |
cattgatggatcagctacacttccacatgaacttgatgcaaaatatcaactaaggttcattgatttcatgcatgcaattatgtcaattttggttttttca |
34944570 |
T |
|
| Q |
235 |
gcaattgcattgtttgatcagaatgtggtgaattgcttttttccagaaccatcaaaagagatacaagaaatcctcacggcgttgcctgtggcaattggcg |
334 |
Q |
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|| |||||| |||||||||| |||||||| || || || |||||| ||| ||| | ||||| | ||||||| || || |||||||| | |||||| | |
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| T |
34944571 |
gctattgcaatgtttgatcataatgtggttaactgtttctttccatcaccttcatatgagatgcgtcaaatccttactgcattgcctgttggaattggtg |
34944670 |
T |
|
| Q |
335 |
ttttttgcagcatgcttttcgttgcatttcctact |
369 |
Q |
| |
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|||| || |||||||| || ||||||||||||||| |
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| T |
34944671 |
ttttctgtagcatgctgtttgttgcatttcctact |
34944705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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