View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_49 (Length: 381)
Name: NF8810A_low_49
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_49 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 28 - 363
Target Start/End: Original strand, 33817084 - 33817419
Alignment:
| Q |
28 |
cagaagctattaatttgcttgatgcaaagtcatttggtggcaacatagctttggaagtggatatagccaaagcctttgatacattagaatggagtttgtt |
127 |
Q |
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| T |
33817084 |
cagaagctattaatttgcttgatgcaaagtcatttggtggcaacatagctttggaagtggatatagccaaagcctttgatacattagaatggagtttttt |
33817183 |
T |
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| Q |
128 |
gattgaagttttaacaaagtttggttttaatgcaacttcccgtaattggataaaggccatactggattcagctcacttatctatctctatcaatggtacc |
227 |
Q |
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| T |
33817184 |
gattgaagttttaacaaagtttggttttagtacaacttcccgtaattggataatggccacactggattcagctcacttatctatctctatcaatggtacc |
33817283 |
T |
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| Q |
228 |
caacatggttacttttaagtgtactttaagtgtactcgcttttctatcttgcagaagaagtgttgagcaggggcatttctaaaccggtggataatggtga |
327 |
Q |
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| T |
33817284 |
caacatggttacttttaagtgtactttaagtgtactcgcttttctatcttgcagaagaagtgttgagcacgggcatttctaaactggtggataatggtga |
33817383 |
T |
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| Q |
328 |
tttagagttgatgtcaagcactagaagctgtgatgt |
363 |
Q |
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| T |
33817384 |
tttagagttgatgtcaagcactagaagttgtgatgt |
33817419 |
T |
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Target: scaffold0006 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 231990 - 231894
Alignment:
| Q |
28 |
cagaagctattaatttgcttgatgcaaagtcatttggtggcaacatagctttggaagtggatatagccaaagcctttgatacattagaatggagttt |
124 |
Q |
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| T |
231990 |
cagaagccattaatttacttgattcaaagtcttttggaggcaatattgctctaaaagtggatatagcaaagacttttgatactcttgaatggagttt |
231894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 12302798 - 12302854
Alignment:
| Q |
53 |
aaagtcatttggtggcaacatagctttggaagtggatatagccaaagcctttgatac |
109 |
Q |
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| T |
12302798 |
aaagtcttttggaggcaacttagctttgaaggtggacatagccaaagcttttgatac |
12302854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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