View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_54 (Length: 367)
Name: NF8810A_low_54
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_54 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 170 - 367
Target Start/End: Complemental strand, 12043822 - 12043623
Alignment:
| Q |
170 |
taattcaataagtcattcaagacat--tctgatcagctgcaactccattatctccttcattctgagttcctccttccaaatcttcacatttaattattgg |
267 |
Q |
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| T |
12043822 |
taattcaataagtcattcaagacatattctgatcagctgcaactccattatctccttcattctaagttcctccttccaaatcttcacatttaattattgg |
12043723 |
T |
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| Q |
268 |
ataagtaccttgacaagaaataacgatatctttccaaaactctatccataaccactttttcaatttgctttccttcatctgtttttgcaaatttgcttga |
367 |
Q |
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| T |
12043722 |
ataagcaccttgacaagaaataacgatatctttccaaaactctatccataaccactttttcaatttgctttccttcatctgtttttgcaaatttgcttga |
12043623 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 12043971 - 12043897
Alignment:
| Q |
20 |
catcagaaattaaaagtaactagaaaaatcacctttcatcaaaaacactttcattaatcatcattggaattgtct |
94 |
Q |
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| T |
12043971 |
catcagaaattaaaagtaactagaaaaatcacctttcatcaaaaacactttcattaatcatcattggaattgtct |
12043897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 210 - 254
Target Start/End: Original strand, 26331899 - 26331943
Alignment:
| Q |
210 |
ctccattatctccttcattctgagttcctccttccaaatcttcac |
254 |
Q |
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| T |
26331899 |
ctccattatctccttcattttgggttcctccttccaaatcttcac |
26331943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 12141803 - 12141859
Alignment:
| Q |
30 |
taaaagtaacta-gaaaaatcacctttcatcaa-aaacactttcattaatcatcatt |
84 |
Q |
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| T |
12141803 |
taaaagtaactaagaaaaataacctttcataaataaaaactttcattaatcatcatt |
12141859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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