View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_56 (Length: 364)
Name: NF8810A_low_56
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_56 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 364
Target Start/End: Complemental strand, 27543372 - 27543027
Alignment:
| Q |
19 |
cattttgtagaggatgagagagagtttgattatattgaaggaagtgaaaaggggccacatcattggggggagctaaaagaagaatgggcagcttgtaaac |
118 |
Q |
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| T |
27543372 |
cattttgtagaggatgagagagagtttgattatattgaaggaagtgaaaagggaccacatcattggggggagctaaaagaagaatgggcagcttgtaaac |
27543273 |
T |
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| Q |
119 |
atggagacatgcaatctcccatagatttgtctaatgagagagtcaaaattattccaaactatcgtcaagttatcaaaaccaaatataaatcttctaatgc |
218 |
Q |
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| T |
27543272 |
atggagacatgcaatctcccatagatttgtctaatgagagagtcaaaattattccaaactatcgtcaagttatcaagaccaaatataaatcttctaatgc |
27543173 |
T |
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| Q |
219 |
cactattatcaatagaggccatgatattgcggtgagcatacatatttctatgaccttttgttgatgttgttgttaaaagagnnnnnnnnggtagaaccct |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
27543172 |
cactattatcaatagaggccatgatattgcggtgagcatacatatttctatgaccttttgttgatgttgttgttaaaagagttttttttggcagaaccct |
27543073 |
T |
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| Q |
319 |
actccaacaaatgattgtatgattgatccctaaaatcggatagaat |
364 |
Q |
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| T |
27543072 |
actccaacaaatgattgtatgattgatccctaaaatcggatagaat |
27543027 |
T |
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