View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_57 (Length: 364)
Name: NF8810A_low_57
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 54879223 - 54878864
Alignment:
| Q |
1 |
tgattaaattaagaagtcggcttagctagacgacaaacaacacnnnnnnnnggggactagatcgatatatatggatgatgataatgatgatgatctcgtt |
100 |
Q |
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| T |
54879223 |
tgattaaattaagaagtcggcttaactagacgacaaacaacacttttttttggggactagatcgatatatatggatgatgat---gatgatgatctcgtt |
54879127 |
T |
|
| Q |
101 |
tttaaatctttgaacaaaatattgtataagatatgcaagttgtcggcatatcaaaatggtagagactagaagataagaaaagaacattgcacttttcatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54879126 |
tttaaatctttgaacaaaatattgtataagatatgcaagttgtcggcatatcaaaatggtagagactagaagataagaaaagaacattgcacttttcatc |
54879027 |
T |
|
| Q |
201 |
----------taaatcttattatagttccaatatatattcttcctcacagggattgcataccggtttgnnnnnnnnnnnnggagggtcttaccaaaatta |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||| |||||||||||||||||||| |
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| T |
54879026 |
attgtgtatttaaatcttattatagttccaatatatattcttcctcacatggattgcatactgtttt--tatatatatatggagggtcttaccaaaatta |
54878929 |
T |
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| Q |
291 |
attttaaaagcatttgaggctgggattgaggactcaaattttgtgtatcatctcaatatattatt |
355 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54878928 |
attttaaaagcatgtgaggctgggattgaggactcaaattttgtgtatcatctcaatatattatt |
54878864 |
T |
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