View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_66 (Length: 354)

Name: NF8810A_low_66
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_66
NF8810A_low_66
[»] chr2 (20 HSPs)
chr2 (1-184)||(16551778-16551959)
chr2 (292-348)||(16551614-16551670)
chr2 (82-184)||(41809183-41809285)
chr2 (82-149)||(1647266-1647333)
chr2 (82-139)||(28677642-28677699)
chr2 (82-151)||(41817198-41817267)
chr2 (109-169)||(5902502-5902562)
chr2 (82-157)||(11063518-11063593)
chr2 (82-125)||(16867769-16867812)
chr2 (117-183)||(29430823-29430889)
chr2 (82-168)||(39621981-39622067)
chr2 (82-143)||(35378995-35379056)
chr2 (82-143)||(43065429-43065490)
chr2 (93-181)||(5452367-5452454)
chr2 (104-180)||(8017486-8017562)
chr2 (104-156)||(11892096-11892148)
chr2 (104-156)||(11897762-11897814)
chr2 (120-168)||(16552510-16552558)
chr2 (91-143)||(18525216-18525268)
chr2 (114-183)||(40837376-40837441)
[»] chr3 (13 HSPs)
chr3 (82-180)||(43115086-43115184)
chr3 (81-156)||(26330289-26330364)
chr3 (82-169)||(42745068-42745155)
chr3 (82-183)||(27792902-27793003)
chr3 (80-144)||(11039317-11039381)
chr3 (108-168)||(45541627-45541687)
chr3 (82-125)||(45432936-45432979)
chr3 (82-156)||(21574520-21574594)
chr3 (87-173)||(27290850-27290936)
chr3 (82-183)||(24785291-24785392)
chr3 (84-169)||(37273166-37273251)
chr3 (38-82)||(34318012-34318056)
chr3 (108-180)||(50015942-50016014)
[»] chr4 (14 HSPs)
chr4 (82-167)||(1137742-1137827)
chr4 (82-181)||(28232575-28232674)
chr4 (85-183)||(3176043-3176141)
chr4 (120-183)||(18628492-18628555)
chr4 (82-183)||(33534108-33534209)
chr4 (82-183)||(43824313-43824414)
chr4 (91-165)||(27721756-27721830)
chr4 (104-169)||(28615387-28615451)
chr4 (84-161)||(41603372-41603449)
chr4 (82-139)||(46110233-46110290)
chr4 (104-169)||(46247257-46247322)
chr4 (3-31)||(23525731-23525759)
chr4 (133-169)||(29778884-29778920)
chr4 (82-126)||(56186897-56186941)
[»] chr8 (13 HSPs)
chr8 (109-181)||(39881662-39881734)
chr8 (82-180)||(6950352-6950450)
chr8 (85-169)||(14949899-14949983)
chr8 (85-180)||(30191083-30191178)
chr8 (82-183)||(7918385-7918486)
chr8 (82-139)||(10383915-10383972)
chr8 (82-143)||(30918143-30918203)
chr8 (7-82)||(8629002-8629077)
chr8 (117-183)||(4560567-4560633)
chr8 (82-179)||(8060699-8060795)
chr8 (91-159)||(779024-779092)
chr8 (84-144)||(9835878-9835938)
chr8 (82-126)||(41606899-41606943)
[»] chr1 (20 HSPs)
chr1 (82-184)||(37241759-37241862)
chr1 (84-139)||(31118075-31118130)
chr1 (118-180)||(14559038-14559100)
chr1 (82-183)||(10199347-10199448)
chr1 (82-166)||(6262050-6262134)
chr1 (82-149)||(11639389-11639456)
chr1 (104-167)||(17269302-17269365)
chr1 (82-165)||(38170647-38170730)
chr1 (117-183)||(4757403-4757469)
chr1 (87-169)||(17420238-17420320)
chr1 (83-180)||(30257714-30257812)
chr1 (84-126)||(34290268-34290310)
chr1 (82-184)||(44422729-44422831)
chr1 (82-183)||(3110021-3110122)
chr1 (106-182)||(6031414-6031490)
chr1 (84-144)||(7136976-7137036)
chr1 (82-142)||(25479611-25479671)
chr1 (147-183)||(35017677-35017713)
chr1 (108-156)||(37175890-37175938)
chr1 (147-183)||(48748534-48748570)
[»] chr6 (15 HSPs)
chr6 (82-149)||(7931699-7931766)
chr6 (117-183)||(2455875-2455941)
chr6 (108-179)||(769194-769265)
chr6 (82-145)||(31420975-31421038)
chr6 (80-175)||(32171330-32171425)
chr6 (85-183)||(34939777-34939875)
chr6 (82-175)||(30863276-30863369)
chr6 (82-126)||(6536977-6537021)
chr6 (82-169)||(34403885-34403972)
chr6 (82-144)||(9027608-9027670)
chr6 (83-180)||(2112231-2112328)
chr6 (82-183)||(8420136-8420237)
chr6 (136-180)||(4331014-4331058)
chr6 (108-176)||(8147012-8147080)
chr6 (108-180)||(27857414-27857486)
[»] chr5 (16 HSPs)
chr5 (84-183)||(38728434-38728533)
chr5 (106-163)||(2568712-2568769)
chr5 (108-183)||(11457154-11457229)
chr5 (91-165)||(13264062-13264136)
chr5 (85-166)||(3977341-3977422)
chr5 (82-162)||(37611175-37611255)
chr5 (82-162)||(37787905-37787985)
chr5 (82-177)||(6109513-6109608)
chr5 (117-180)||(7856605-7856667)
chr5 (82-180)||(7907911-7908010)
chr5 (82-125)||(33533536-33533579)
chr5 (82-172)||(40534229-40534319)
chr5 (82-143)||(8089966-8090027)
chr5 (82-151)||(35963271-35963340)
chr5 (85-169)||(1899187-1899270)
chr5 (84-172)||(4619739-4619827)
[»] chr7 (10 HSPs)
chr7 (82-169)||(20553133-20553220)
chr7 (90-181)||(36598297-36598388)
chr7 (82-132)||(26935547-26935597)
chr7 (85-183)||(33894660-33894758)
chr7 (82-183)||(34754749-34754850)
chr7 (92-176)||(39566153-39566237)
chr7 (82-183)||(25670525-25670626)
chr7 (91-180)||(21247965-21248054)
chr7 (104-169)||(36537960-36538025)
chr7 (82-143)||(46082066-46082127)


Alignment Details
Target: chr2 (Bit Score: 149; Significance: 1e-78; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 16551959 - 16551778
Alignment:
Q  1 atggccttgtttggataaacatcttaattaaaaatggttatcgtataagtgctcaagtatagggtatttctataacaaaatagcttatggaaataagctg 100  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||    
T  16551959 atggccttgtttggataaacatcttaattaaa--tggttatcgtataagtgctcaattataaggtgtttctataacaaaatagcttatggaaataagctg 16551862  T
Q  101 gatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagctt 184  Q
     |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16551861 aatacaacttatgtatatgtcataagatctttccataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagctt 16551778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 16551670 - 16551614
Alignment:
Q  292 tacttcaatagatcacaactaaatgcaataaaaccagaacattcagcaccatcaact 348  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  16551670 tacttcaataaatcagaactaaatgcaataaaaccagaacattcagcaccatcaact 16551614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 41809285 - 41809183
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 181  Q
    ||||||||||||||||||  | |||||||||||| |||||||||| | ||| || ||||||||  || || |||| |||||||||||| ||| | |||||    
T  41809285 agcttatggaaataagctaaaaacaacttatgaacatgtcataagttgtttccacaagctcttacaatcagtctcacaagtgtttatgccaacaaataag 41809186  T
Q  182 ctt 184  Q
    |||    
T  41809185 ctt 41809183  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 1647266 - 1647333
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaa 149  Q
    ||||||||||||||||||| | ||| |||||||  |||||||||| | |||||||||| |||||||||    
T  1647266 agcttatggaaataagctgaaaacagcttatgagcatgtcataagctgttttcataagttcttctaaa 1647333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 28677699 - 28677642
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataag 139  Q
    ||||||||||||||||| | | |||||||||||| |||||||||| | ||||||||||    
T  28677699 agcttatggaaataagccgaaaacaacttatgaaaatgtcataagctgttttcataag 28677642  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 41817198 - 41817267
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaaca 151  Q
    ||||||||||||||||||| | |||| |||| || |||||||||||| |||||||||  ||| |||||||    
T  41817198 agcttatggaaataagctgaaaacaaattatcaacatgtcataagatgttttcataaattctcctaaaca 41817267  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 5902562 - 5902502
Alignment:
Q  109 ttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatg 169  Q
    ||||||| |||||||||| | |||||||||| ||||| ||||| |||| ||||||||||||    
T  5902562 ttatgaacatgtcataagctgttttcataagttcttccaaacagtctcacaagtgtttatg 5902502  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 11063518 - 11063593
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcg 157  Q
    |||||||| |||||||||  | |||||||||| | ||||||||| || ||| |||||||||||| ||||| |||||    
T  11063518 agcttatgaaaataagctaaaaacaacttatggacatgtcataatatgtttccataagctcttccaaacagtctcg 11063593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 16867769 - 16867812
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataa 125  Q
    |||||||||||||||| || | ||||||||||||||||||||||    
T  16867769 agcttatggaaataagttgaaaacaacttatgaatatgtcataa 16867812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 29430823 - 29430889
Alignment:
Q  117 atgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagct 183  Q
    |||||||||| | |||||||||| ||||| ||| | || | ||||||||||||||| ||||||||||    
T  29430823 atgtcataagctattttcataagttcttccaaatagtcccacaagtgtttatgtcagtagataagct 29430889  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 168
Target Start/End: Original strand, 39621981 - 39622067
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttat 168  Q
    |||||| |||||||||||| | |||| |||||||| ||||||||| | |||||||||| |||   ||||| | ||||||||| ||||    
T  39621981 agcttaaggaaataagctgaaaacaatttatgaatttgtcataagttgttttcataagttctctcaaacagtgtcgcaagtgcttat 39622067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 35379056 - 35378995
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctct 143  Q
    |||||||| |||||||||| | |||||||||||| | ||||| || | ||||||||||||||    
T  35379056 agcttatgaaaataagctgaaaacaacttatgaacaagtcatcagctgttttcataagctct 35378995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 43065490 - 43065429
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctct 143  Q
    ||||||| ||||||||||| | |||| ||||| | |||||||||| | ||||||||||||||    
T  43065490 agcttattgaaataagctgaaaacaatttatggacatgtcataagttgttttcataagctct 43065429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 181
Target Start/End: Original strand, 5452367 - 5452454
Alignment:
Q  93 ataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 181  Q
    |||||||| ||||| |||||| | |||||||||| | |||  |||| |||||| ||||| |||| ||||||  ||||||||||||||||    
T  5452367 ataagctgaatacagcttatgtacatgtcataagttttttctataatctcttccaaacagtctc-caagtgaatatgtcaatagataag 5452454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 180
Target Start/End: Original strand, 8017486 - 8017562
Alignment:
Q  104 acaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataa 180  Q
    |||| ||||||| || ||||||| | |||||||||| ||| | ||| |||| | |||||| ||||||||||||||||    
T  8017486 acaaattatgaacatatcataagctgttttcataagttctcccaaataatcgcacaagtgcttatgtcaatagataa 8017562  T

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Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 11892096 - 11892148
Alignment:
Q  104 acaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctc 156  Q
    |||| |||||||||||||||||  | ||||||||||||||  |||||||||||    
T  11892096 acaatttatgaatatgtcataaactgttttcataagctctcgtaaacaatctc 11892148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 11897762 - 11897814
Alignment:
Q  104 acaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctc 156  Q
    |||| |||||||||||||||||  | ||||||||||||||  |||||||||||    
T  11897762 acaatttatgaatatgtcataaactgttttcataagctctcgtaaacaatctc 11897814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 16552558 - 16552510
Alignment:
Q  120 tcataagatcttttcataagctcttctaaacaatctcgcaagtgtttat 168  Q
    |||||||||||||||||||| |||   |||||||||| |||||||||||    
T  16552558 tcataagatcttttcataagatctaacaaacaatctcacaagtgtttat 16552510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 18525268 - 18525216
Alignment:
Q  91 aaataagctggatacaacttatgaatatgtcataagatcttttcataagctct 143  Q
    |||||||||| | | |||||| |||||||||||||| | ||||||||||||||    
T  18525268 aaataagctgaaaataacttacgaatatgtcataagctattttcataagctct 18525216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 183
Target Start/End: Complemental strand, 40837441 - 40837376
Alignment:
Q  114 aatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagct 183  Q
    ||||||||||||||| ||||||||| |||| | ||||| ||||    |||||||||||| ||||||||||    
T  40837441 aatatgtcataagatgttttcataaactctcccaaacagtctc----gtgtttatgtcagtagataagct 40837376  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 43115086 - 43115184
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataa 180  Q
    ||||||||||||||||||| | |||| ||||| | |||||||||| | ||| ||||| |||||| |||||||||| |||||| ||||||||||||||||    
T  43115086 agcttatggaaataagctgaaaacaagttatggacatgtcataagttgtttccataaactcttccaaacaatctcacaagtgattatgtcaatagataa 43115184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 156
Target Start/End: Complemental strand, 26330364 - 26330289
Alignment:
Q  81 tagcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctc 156  Q
    |||||||||||||||| ||| | | ||| |||||| |||||| ||| | |||||||||||||||||||||| ||||    
T  26330364 tagcttatggaaataacctgaaaagaacctatgaacatgtcagaagttgttttcataagctcttctaaacagtctc 26330289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 169
Target Start/End: Original strand, 42745068 - 42745155
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatg 169  Q
    |||||||||||||||| || | |||||||||||| |||||||||| | ||| |||||  ||||||||| ||| || |||||| |||||    
T  42745068 agcttatggaaataagatgaaaacaacttatgaacatgtcataagttgtttacataaattcttctaaataatatcacaagtgcttatg 42745155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 27792902 - 27793003
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 181  Q
    ||||||| ||||||||||| | ||||||||| ||| ||||| ||| | ||| ||||| ||||   ||||| |||| |  |||||||||||||||||||||    
T  27792902 agcttatagaaataagctgaaaacaacttataaatttgtcaaaagctatttccataaactctatcaaacagtctcacgtgtgtttatgtcaatagataag 27793001  T
Q  182 ct 183  Q
    ||    
T  27793002 ct 27793003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 144
Target Start/End: Complemental strand, 11039381 - 11039317
Alignment:
Q  80 atagcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctctt 144  Q
    |||||||||||| |||||||| | |||||||||| | ||||||||| || ||| |||||||||||    
T  11039381 atagcttatggagataagctgaaaacaacttatggacatgtcataatatgtttccataagctctt 11039317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 45541627 - 45541687
Alignment:
Q  108 cttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttat 168  Q
    |||||||| |||||||||| | |||||||||| ||||||||||| |||  |||||||||||    
T  45541627 cttatgaacatgtcataagctgttttcataagttcttctaaacagtcttacaagtgtttat 45541687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 45432979 - 45432936
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataa 125  Q
    ||||||||||||||||||| | |||||||||||| |||||||||    
T  45432979 agcttatggaaataagctgaaaacaacttatgaacatgtcataa 45432936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 21574520 - 21574594
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctc 156  Q
    ||||||||||||||||||  |  || |||||||| |||||||||| | |||||||||||||| | ||||| ||||    
T  21574520 agcttatggaaataagctaaaagcagcttatgaacatgtcataagttgttttcataagctctcccaaacagtctc 21574594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 27290936 - 27290850
Alignment:
Q  87 atggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaa 173  Q
    |||||||||||||| | ||| ||||||   |||||||||| | |||||||||||||||| |||||  ||| ||| |||| |||||||    
T  27290936 atggaaataagctgaaaacagcttatgggcatgtcataagctgttttcataagctcttcgaaacagcctcacaattgttgatgtcaa 27290850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 24785291 - 24785392
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 181  Q
    |||||||| |||||| ||  | |||||||||||| ||||| |||||| ||||  |||| ||| | ||||| | || |||||| ||||| |||||||||||    
T  24785291 agcttatgaaaataaactaaaaacaacttatgaaaatgtcctaagatgtttttgtaagttctccgaaacagtgtcacaagtgcttatggcaatagataag 24785390  T
Q  182 ct 183  Q
    ||    
T  24785391 ct 24785392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 169
Target Start/End: Original strand, 37273166 - 37273251
Alignment:
Q  84 cttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatg 169  Q
    |||||||||||||| || | |||||||||| | |||||||||| | ||| |||||||||| | ||||| |||| | |||| |||||    
T  37273166 cttatggaaataagttgaaaacaacttatggacatgtcataagttgtttccataagctctcccaaacagtctcaccagtgcttatg 37273251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 34318012 - 34318056
Alignment:
Q  38 ttatcgtataagtgctcaagtatagggtatttctataacaaaata 82  Q
    |||| |||| |||||||||||||| | ||||||||||||||||||    
T  34318012 ttatggtatcagtgctcaagtataagctatttctataacaaaata 34318056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 50015942 - 50016014
Alignment:
Q  108 cttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataa 180  Q
    ||||| || |||||||| | |||||||||||| |||   ||||| |||| |||||||||||| ||||||||||    
T  50015942 cttataaacatgtcatacgttcttttcataagttctctcaaacagtctcacaagtgtttatgccaatagataa 50016014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 167
Target Start/End: Original strand, 1137742 - 1137827
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgttta 167  Q
    ||||||||||||||| ||| | |||||||||||| |||||||||||| |||||||||| ||| ||||||| | || ||||||||||    
T  1137742 agcttatggaaataaactgaaaacaacttatgaacatgtcataagatgttttcataagttctcctaaacagtgtcacaagtgttta 1137827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 82 - 181
Target Start/End: Original strand, 28232575 - 28232674
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 181  Q
    ||||| |||||||||| || | ||||||||| |||| |||||||| | ||| || ||||||||| ||||| ||||||||||| | |||||||||||||||    
T  28232575 agcttgtggaaataagatgaaaacaacttataaataagtcataagttgtttccacaagctcttccaaacagtctcgcaagtgctcatgtcaatagataag 28232674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 85 - 183
Target Start/End: Complemental strand, 3176141 - 3176043
Alignment:
Q  85 ttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagct 183  Q
    |||||||||||||||| | |||||||||  | ||| |||||||| |||||||||||||| ||||||| | || ||||||||| || ||| | |||||||    
T  3176141 ttatggaaataagctgaaaacaacttatagacatgacataagatgttttcataagctctcctaaacagtttcacaagtgtttgtgccaacatataagct 3176043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 18628555 - 18628492
Alignment:
Q  120 tcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagct 183  Q
    ||||||| | |||||||||||||| | ||||| |||| ||||||||||||||| ||||||||||    
T  18628555 tcataagttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagtagataagct 18628492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 33534209 - 33534108
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 181  Q
    |||||||| |||||||||| | |||||||||| |||||||| ||  | ||||||||||||||   ||| | |||| |||||  |||||||| ||||||||    
T  33534209 agcttatgaaaataagctgaaaacaacttatggatatgtcacaatttgttttcataagctctctcaaatactctcacaagtacttatgtcactagataag 33534110  T
Q  182 ct 183  Q
    ||    
T  33534109 ct 33534108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 43824313 - 43824414
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 181  Q
    ||||||||||||||||||| | |||||||||||| ||| ||||||   |||| |||   ||| | ||||||| ||||||||| |||||||| || |||||    
T  43824313 agcttatggaaataagctgaaaacaacttatgaacatgccataagccatttttatatattctcccaaacaatatcgcaagtgcttatgtcagtaaataag 43824412  T
Q  182 ct 183  Q
    ||    
T  43824413 ct 43824414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 165
Target Start/End: Original strand, 27721756 - 27721830
Alignment:
Q  91 aaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtt 165  Q
    |||||||||| | ||| |||||| ||||||||||||   |||| |||||||||  ||||||||||| ||||||||    
T  27721756 aaataagctgaaaacagcttatggatatgtcataagtagtttttataagctctcttaaacaatctcacaagtgtt 27721830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 28615387 - 28615451
Alignment:
Q  104 acaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatg 169  Q
    |||||||||||| ||||||| || | |||||||||| || || |||||||||| ||||||||||||    
T  28615387 acaacttatgaaaatgtcattagctgttttcataagttc-tccaaacaatctcacaagtgtttatg 28615451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 41603449 - 41603372
Alignment:
Q  84 cttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaag 161  Q
    ||||||||||||||||| | | | |||||||||||||||| |  | ||| ||||||||||   |||||||||||||||    
T  41603449 cttatggaaataagctgaaaatagcttatgaatatgtcattaactgtttacataagctctgtgaaacaatctcgcaag 41603372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 46110233 - 46110290
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataag 139  Q
    ||||||| ||||||||||| | ||||||||||| ||| ||||||| | ||||||||||    
T  46110233 agcttatagaaataagctgaaaacaacttatgagtatatcataagttgttttcataag 46110290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 46247257 - 46247322
Alignment:
Q  104 acaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatg 169  Q
    ||||||||| || |||||||||| |||||||||||| |||   | |||||||| ||||||||||||    
T  46247257 acaacttatcaacatgtcataagttcttttcataagatctctcagacaatctcacaagtgtttatg 46247322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 3 - 31
Target Start/End: Complemental strand, 23525759 - 23525731
Alignment:
Q  3 ggccttgtttggataaacatcttaattaa 31  Q
    |||||||||||||||||||||||||||||    
T  23525759 ggccttgtttggataaacatcttaattaa 23525731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 169
Target Start/End: Original strand, 29778884 - 29778920
Alignment:
Q  133 tcataagctcttctaaacaatctcgcaagtgtttatg 169  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  29778884 tcataagcttttctaaacaatctcacaagtgtttatg 29778920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 56186941 - 56186897
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataag 126  Q
    |||||||||||||||| |  ||||||||||||||||||| |||||    
T  56186941 agcttatggaaataagtttaatacaacttatgaatatgttataag 56186897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 181
Target Start/End: Complemental strand, 39881734 - 39881662
Alignment:
Q  109 ttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 181  Q
    ||||||| |||||||||| | |||||| ||||||||| |||||||||| |||||||||||| |||||||||||    
T  39881734 ttatgaacatgtcataagctattttcacaagctcttccaaacaatctcacaagtgtttatgccaatagataag 39881662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 6950352 - 6950450
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataa 180  Q
    ||||||||||||||||||| | |||||||||  | |||||||| | | ||| |||||||||| | |||||||||| ||| |||||||| || |||||||    
T  6950352 agcttatggaaataagctgaaaacaacttatcgacatgtcataggttgtttacataagctctcccaaacaatctcacaaatgtttatgccagtagataa 6950450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 14949899 - 14949983
Alignment:
Q  85 ttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatg 169  Q
    |||| ||||||||||| | ||| |||||| | |||||||||| | |||||||||||||| ||||||| |||| ||| ||||||||    
T  14949899 ttatagaaataagctgaaaacagcttatggacatgtcataagttattttcataagctctcctaaacagtctcacaaatgtttatg 14949983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 180
Target Start/End: Complemental strand, 30191178 - 30191083
Alignment:
Q  85 ttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataa 180  Q
    |||||||||||||||| | |||| || |||| |||||||||| | ||| |||||||||| | ||||| |||  |||||| ||||| ||||||||||    
T  30191178 ttatggaaataagctgaaaacaagttttgaacatgtcataagttgtttccataagctctcccaaacagtctaacaagtgcttatgccaatagataa 30191083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 7918486 - 7918385
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 181  Q
    ||||||| |||||||| |||| ||| |||||||| ||||| |||| | |||||||||||||| | ||||| |||| ||  || ||||| || ||||||||    
T  7918486 agcttattgaaataagttggaaacagcttatgaacatgtcttaagttgttttcataagctctcccaaacagtctctcatctgcttatgccattagataag 7918387  T
Q  182 ct 183  Q
    ||    
T  7918386 ct 7918385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 10383915 - 10383972
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataag 139  Q
    ||||||||||||||||||| | ||| |||||||| |||||||||| | ||||||||||    
T  10383915 agcttatggaaataagctgtaaacagcttatgaaaatgtcataagctgttttcataag 10383972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 30918143 - 30918203
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctct 143  Q
    ||||||||||||||||||| | |||||||||||| |||||| ||| | ||||||||||||||    
T  30918143 agcttatggaaataagctgaaaacaacttatgaa-atgtcacaagttgttttcataagctct 30918203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 82
Target Start/End: Original strand, 8629002 - 8629077
Alignment:
Q  7 ttgtttggataaacatcttaattaaaaatggttatcgtataagtgctcaagtatagggtatttctataacaaaata 82  Q
    |||||||||||||||| |||| || || || ||||| |||||||||| |  |||| | ||||||||||||||||||    
T  8629002 ttgtttggataaacattttaagtataagtgtttatcatataagtgcttatttataagctatttctataacaaaata 8629077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 4560567 - 4560633
Alignment:
Q  117 atgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagct 183  Q
    |||| ||||| | ||| |||||| ||||| |||||| ||| |||||| |||||||||||||||||||    
T  4560567 atgttataagttatttccataagttcttccaaacaacctcacaagtgcttatgtcaatagataagct 4560633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 8060699 - 8060795
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagata 179  Q
    ||||||||||||||||||| | | ||||||||||  |  |||||  | ||||||||||||||   ||||| | ||| |||||||||||||||||||||    
T  8060699 agcttatggaaataagctgaaaataacttatgaactttccataatttgttttcataagctctctcaaacagtttcg-aagtgtttatgtcaatagata 8060795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 779092 - 779024
Alignment:
Q  91 aaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgca 159  Q
    ||||||| || | |||||||||||| |||||||||| | ||||| |||| ||||  |||||||||||||    
T  779092 aaataagatgaaaacaacttatgaacatgtcataagttgttttcgtaagttctttcaaacaatctcgca 779024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 9835938 - 9835878
Alignment:
Q  84 cttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctctt 144  Q
    |||||||||||||| || | ||| |||||||| |||||||||| | ||| |||||||||||    
T  9835938 cttatggaaataagatgaaaacagcttatgaacatgtcataagctgtttacataagctctt 9835878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 41606943 - 41606899
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataag 126  Q
    ||||||||||||||||||| | ||||||| |||| ||||||||||    
T  41606943 agcttatggaaataagctgaaaacaacttttgaacatgtcataag 41606899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 37241862 - 37241759
Alignment:
Q  82 agcttatggaaataagctggatacaa-cttatgaatatgtcataagatctttt-cataagctcttctaaacaatctcgcaagtgtttatgtcaatagata 179  Q
    |||||||| |||||||||||| | || ||||||||||| ||||||| | |||| |||| ||||| ||||||||||||||||||| ||||| || ||||||    
T  37241862 agcttatgaaaataagctggaaaaaaacttatgaatatatcataagttgttttgcatatgctctcctaaacaatctcgcaagtgcttatg-cagtagata 37241764  T
Q  180 agctt 184  Q
    |||||    
T  37241763 agctt 37241759  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 139
Target Start/End: Original strand, 31118075 - 31118130
Alignment:
Q  84 cttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataag 139  Q
    ||||||||||||||||| | |||||| ||||| |||||||||||| ||||||||||    
T  31118075 cttatggaaataagctgaaaacaactgatgaacatgtcataagatgttttcataag 31118130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 180
Target Start/End: Original strand, 14559038 - 14559100
Alignment:
Q  118 tgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataa 180  Q
    ||||||||| |||||  || |||||| |||||||||||||||| ||||||||||| |||||||    
T  14559038 tgtcataagctctttctattagctctcctaaacaatctcgcaaatgtttatgtcagtagataa 14559100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 10199448 - 10199347
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 181  Q
    |||||||| |||||||||| | |||||||||||| |||||||||| | ||||||| || ||| | ||| | | || |||||| |||||| | ||||||||    
T  10199448 agcttatgaaaataagctgaaaacaacttatgaacatgtcataagctattttcatgagttctcccaaatagtgtcacaagtgcttatgttagtagataag 10199349  T
Q  182 ct 183  Q
    ||    
T  10199348 ct 10199347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 166
Target Start/End: Original strand, 6262050 - 6262134
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgttt 166  Q
    ||||| |||||||||| || | | | |||||||| |||||||||| | || |||||||||||| |||||| |||| |||||||||    
T  6262050 agcttgtggaaataagttgaaaatagcttatgaacatgtcataagttgttctcataagctcttgtaaacagtctcacaagtgttt 6262134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 11639456 - 11639389
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaa 149  Q
    |||||||| |||||||||  | ||| |||||| | |||||||||| | ||||||||||||||||||||    
T  11639456 agcttatgaaaataagctaaaaacagcttatggacatgtcataagctgttttcataagctcttctaaa 11639389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 167
Target Start/End: Original strand, 17269302 - 17269365
Alignment:
Q  104 acaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgttta 167  Q
    |||||| ||||| |||||||||| | ||||||||||| || | |||||||||| ||||||||||    
T  17269302 acaactcatgaacatgtcataaggtattttcataagcactaccaaacaatctcacaagtgttta 17269365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 165
Target Start/End: Complemental strand, 38170730 - 38170647
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtt 165  Q
    |||||| | ||| |||||| | |||||||||||| |||||||||| | |||||||||||||| | || || |||| ||||||||    
T  38170730 agcttaggaaaacaagctgaaaacaacttatgaacatgtcataagctgttttcataagctctcccaagcagtctcacaagtgtt 38170647  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 4757403 - 4757469
Alignment:
Q  117 atgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagct 183  Q
    |||||||||| | |||||||||| ||| | |||   |||| ||||||||||||||||||||||||||    
T  4757403 atgtcataagttgttttcataagttctgccaaatggtctcacaagtgtttatgtcaatagataagct 4757469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 169
Target Start/End: Original strand, 17420238 - 17420320
Alignment:
Q  87 atggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatg 169  Q
    ||||||||||| || | |||| ||||| | |||| ||||| | |||||||||||||||| ||||| |||  ||||||||||||    
T  17420238 atggaaataagttgaaaacaatttatggacatgtaataagttgttttcataagctcttcaaaacagtctaacaagtgtttatg 17420320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 30257714 - 30257812
Alignment:
Q  83 gcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgc-aagtgtttatgtcaatagataa 180  Q
    |||||| ||||||||||| | ||| |||||||| ||||||||| |  |||| ||||||||| ||||| | |||| | || ||||||||||| |||||||    
T  30257714 gcttatagaaataagctgaaaacagcttatgaacatgtcataaaagatttttataagctctcctaaatagtctcacaaaatgtttatgtcagtagataa 30257812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 34290268 - 34290310
Alignment:
Q  84 cttatggaaataagctggatacaacttatgaatatgtcataag 126  Q
    |||||| |||||||||| | |||||||||||||||||||||||    
T  34290268 cttatgaaaataagctgaaaacaacttatgaatatgtcataag 34290310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 184
Target Start/End: Original strand, 44422729 - 44422831
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 181  Q
    |||||||| |||||||||| |  || |||||| | |||||||||| | |||||||||||||| | | ||| ||||  ||||||||||  || ||||||||    
T  44422729 agcttatgaaaataagctgtagtcagcttatggacatgtcataagctattttcataagctctcccagacagtctcaaaagtgtttatcccagtagataag 44422828  T
Q  182 ctt 184  Q
    |||    
T  44422829 ctt 44422831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 3110021 - 3110122
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 181  Q
    ||||||||||||||||| | | |||| ||||| || ||||| ||| | ||| |||||| ||||  ||||| ||||| ||||| |||||||| ||| ||||    
T  3110021 agcttatggaaataagcggaaaacaagttatggatgtgtcacaagttgtttgcataagttcttacaaacagtctcggaagtgcttatgtcactagttaag 3110120  T
Q  182 ct 183  Q
    ||    
T  3110121 ct 3110122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 6031490 - 6031414
Alignment:
Q  106 aacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagc 182  Q
    |||||||||  | |||||||| | |||||||||||||||||||||| || | |||||| ||||| || || ||||||    
T  6031490 aacttatgagcacgtcataagctgttttcataagctcttctaaacattcgcacaagtgcttatgccagtaaataagc 6031414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 7137036 - 7136976
Alignment:
Q  84 cttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctctt 144  Q
    |||||| |||||||||| | | |||||||||||||||||||||   |||||||||| ||||    
T  7137036 cttatgaaaataagctgaaaataacttatgaatatgtcataagcgattttcataagttctt 7136976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 142
Target Start/End: Original strand, 25479611 - 25479671
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctc 142  Q
    |||||||| |||||||||| | |||||| ||||| |||||||||  | |||||||||||||    
T  25479611 agcttatgaaaataagctgaaaacaactaatgaacatgtcataatctattttcataagctc 25479671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 35017677 - 35017713
Alignment:
Q  147 aaacaatctcgcaagtgtttatgtcaatagataagct 183  Q
    |||||||||| |||||||||||| |||||||||||||    
T  35017677 aaacaatctcacaagtgtttatgccaatagataagct 35017713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 156
Target Start/End: Complemental strand, 37175938 - 37175890
Alignment:
Q  108 cttatgaatatgtcataagatcttttcataagctcttctaaacaatctc 156  Q
    ||||| ||||||||||||| | ||| |||||||||||||||||| ||||    
T  37175938 cttataaatatgtcataagttgtttccataagctcttctaaacagtctc 37175890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 147 - 183
Target Start/End: Complemental strand, 48748570 - 48748534
Alignment:
Q  147 aaacaatctcgcaagtgtttatgtcaatagataagct 183  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  48748570 aaacaatctcacaagtgtttatgtcaatggataagct 48748534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 7931766 - 7931699
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaa 149  Q
    |||||| |||||||||||| | |||||||| ||| |||||||||| | ||||||||||||||||||||    
T  7931766 agcttacggaaataagctgaaaacaacttaagaacatgtcataagttgttttcataagctcttctaaa 7931699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 183
Target Start/End: Original strand, 2455875 - 2455941
Alignment:
Q  117 atgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagct 183  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||| ||||| |  ||||||||||    
T  2455875 atgtcataagttgtttccataagctcttctaaacaatctcgcaagtgcttatgccggtagataagct 2455941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 179
Target Start/End: Original strand, 769194 - 769265
Alignment:
Q  108 cttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagata 179  Q
    |||||||| |||||||||||| |||||||||| || || ||||| |||| |||||||||||  |||||||||    
T  769194 cttatgaacatgtcataagatgttttcataagttcatccaaacagtctcacaagtgtttataccaatagata 769265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 31420975 - 31421038
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttc 145  Q
    |||||||| |||||||||| | ||||||||||||||||  ||||| | ||||||||||||||||    
T  31420975 agcttatgaaaataagctgaaaacaacttatgaatatgcgataagttgttttcataagctcttc 31421038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 175
Target Start/End: Complemental strand, 32171425 - 32171330
Alignment:
Q  80 atagcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaata 175  Q
    ||||||||||||||||||||| | | | ||| || |  ||||||||| | ||||||||||||||   ||||| ||||||||||| |||||||||||    
T  32171425 atagcttatggaaataagctgaaaatagcttctggacttgtcataagctgttttcataagctctctcaaacagtctcgcaagtgcttatgtcaata 32171330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 183
Target Start/End: Original strand, 34939777 - 34939875
Alignment:
Q  85 ttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagct 183  Q
    |||||||||||||||| | |||| ||||| | |||||||||| | ||| | |||||||| | ||||| | || ||| ||||||||||| ||||||||||    
T  34939777 ttatggaaataagctgaaaacaatttatggacatgtcataagctgtttccgtaagctctccaaaacagtttcacaaatgtttatgtcactagataagct 34939875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 175
Target Start/End: Original strand, 30863276 - 30863369
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaata 175  Q
    ||||||| ||| ||||||| | |||||||||| | |||||||||| | |||||||||||||| | ||| | |||  |||||||||||| |||||    
T  30863276 agcttatagaagtaagctgaaaacaacttatgtacatgtcataagttgttttcataagctctaccaaagagtctaacaagtgtttatgccaata 30863369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 6536977 - 6537021
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataag 126  Q
    ||||||||||||||||||| | |||||||||||| ||||||||||    
T  6536977 agcttatggaaataagctgaaaacaacttatgaacatgtcataag 6537021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 169
Target Start/End: Original strand, 34403885 - 34403972
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatg 169  Q
    |||||||||||||||| || | ||| |||||||| |||||||||| | ||||| |||  ||| ||||||| |||  ||||||||||||    
T  34403885 agcttatggaaataaggtgaaaacaccttatgaacatgtcataagttgttttcttaacttctcctaaacagtctaacaagtgtttatg 34403972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 9027608 - 9027670
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctctt 144  Q
    |||||||| |||||||||| | |||||||||| | |||||||||| | ||| |||||||||||    
T  9027608 agcttatgaaaataagctgaaaacaacttatggacatgtcataagttatttccataagctctt 9027670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 180
Target Start/End: Original strand, 2112231 - 2112328
Alignment:
Q  83 gcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataa 180  Q
    |||||| ||||||| | | | |||||||||||| |||||||||| | |||  || || |||| | |||||||||  |||| |||||||||||||||||    
T  2112231 gcttatagaaataaaccgaaaacaacttatgaacatgtcataagttgtttctatgagatcttttgaacaatctcagaagtatttatgtcaatagataa 2112328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 8420237 - 8420136
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 181  Q
    |||||||||||||||| || | | | ||| || | |||||||||| | |||  |||||||||    |||| |||| ||||||||||||||||||||||||    
T  8420237 agcttatggaaataagttgaaaatagcttgtggacatgtcataagctatttctataagctctcactaacagtctcacaagtgtttatgtcaatagataag 8420138  T
Q  182 ct 183  Q
    ||    
T  8420137 ct 8420136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 180
Target Start/End: Complemental strand, 4331058 - 4331014
Alignment:
Q  136 taagctcttctaaacaatctcgcaagtgtttatgtcaatagataa 180  Q
    |||| |||| ||||||||||| |||||| ||||||||||||||||    
T  4331058 taagttcttttaaacaatctcacaagtgcttatgtcaatagataa 4331014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 8147080 - 8147012
Alignment:
Q  108 cttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatag 176  Q
    |||||| |||||| ||||| | |||||||||||||||  ||||| |||  |||||| ||||||||||||    
T  8147080 cttatgcatatgttataagttgttttcataagctctttgaaacagtctaacaagtggttatgtcaatag 8147012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 108 - 180
Target Start/End: Original strand, 27857414 - 27857486
Alignment:
Q  108 cttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataa 180  Q
    |||||| | |||||||||| | |||||||||||||| | ||||| | || ||||||| ||||||| |||||||    
T  27857414 cttatggagatgtcataagttgttttcataagctctcccaaacagtttcacaagtgtctatgtcagtagataa 27857486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 183
Target Start/End: Original strand, 38728434 - 38728533
Alignment:
Q  84 cttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagct 183  Q
    ||||||||||||||||| | ||| |||| ||  |||||||||| | |||||||||||||| | |||||||| | || ||||||||  |||||||||||||    
T  38728434 cttatggaaataagctgaaaacagcttaggagcatgtcataagctattttcataagctctcccaaacaatcacacaggtgtttataccaatagataagct 38728533  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 163
Target Start/End: Original strand, 2568712 - 2568769
Alignment:
Q  106 aacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtg 163  Q
    ||||||||||||||||||||| | |||||||||| ||||||||||| |||| ||||||    
T  2568712 aacttatgaatatgtcataagctgttttcataagttcttctaaacagtctctcaagtg 2568769  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 183
Target Start/End: Original strand, 11457154 - 11457229
Alignment:
Q  108 cttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagct 183  Q
    |||||| | |||||||||| | ||| |||||||||||| ||||| |||| ||||||||| || |||||||||||||    
T  11457154 cttatggacatgtcataagttgtttccataagctcttcaaaacagtctcacaagtgtttctgccaatagataagct 11457229  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 165
Target Start/End: Complemental strand, 13264136 - 13264062
Alignment:
Q  91 aaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtt 165  Q
    |||||||||| | ||| |||||||||||| |||||| | ||| ||||| |||||| ||||| |||||||||||||    
T  13264136 aaataagctgaaaacagcttatgaatatggcataagctgtttccataaactcttccaaacagtctcgcaagtgtt 13264062  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 85 - 166
Target Start/End: Original strand, 3977341 - 3977422
Alignment:
Q  85 ttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgttt 166  Q
    ||||| |||||||||| | ||| || | ||| |||||||||| | |||||||||| | |||||||||||||| |||||||||    
T  3977341 ttatgaaaataagctgaagacagctaaggaacatgtcataagctgttttcataagtttttctaaacaatctcacaagtgttt 3977422  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 37611255 - 37611175
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagt 162  Q
    ||||||||||||||| ||| | ||| |||||||| |||||| ||| | ||||||||||||||   |||||||||| |||||    
T  37611255 agcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagt 37611175  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 37787985 - 37787905
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagt 162  Q
    ||||||||||||||| ||| | ||| |||||||| |||||| ||| | ||||||||||||||   |||||||||| |||||    
T  37787985 agcttatggaaataacctgaaaacagcttatgaacatgtcacaagttgttttcataagctctctcaaacaatctcacaagt 37787905  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 177
Target Start/End: Original strand, 6109513 - 6109608
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaataga 177  Q
    ||||| ||||||||||||| | |||||||||| | || ||||||  | ||| |||||||||| | ||| | |||| |||||||||||| |||||||    
T  6109513 agcttttggaaataagctgaaaacaacttatggacatatcataatttttttccataagctctccaaaatattctcacaagtgtttatgccaataga 6109608  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 180
Target Start/End: Original strand, 7856605 - 7856667
Alignment:
Q  117 atgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataa 180  Q
    |||||||||| | |||| ||||| |||| ||||||||||||||||||||| |||||||| ||||    
T  7856605 atgtcataagttgtttttataagttctt-taaacaatctcgcaagtgtttttgtcaataaataa 7856667  T

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Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 7907911 - 7908010
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtca-taagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataa 180  Q
    |||||||| || ||||||| | ||||||||||||||| ||| || | | |||||||||| ||||| ||||| ||||  |||||||||||| | |||||||    
T  7907911 agcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacagtctcataagtgtttatgttattagataa 7908010  T

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Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 33533579 - 33533536
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataa 125  Q
    |||||||||||||||| || | ||||||||||||||||||||||    
T  33533579 agcttatggaaataagttgaaaacaacttatgaatatgtcataa 33533536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 40534229 - 40534319
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtca 172  Q
    ||||||||||| |||| || | || | ||||||| |||||||||| |  || |||||||||| ||||||| | || |||||||||||||||    
T  40534229 agcttatggaagtaagatgaaaactaattatgaacatgtcataagctacttccataagctctcctaaacagtatcacaagtgtttatgtca 40534319  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 8089966 - 8090027
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctct 143  Q
    |||||||| |||||||||| | ||| |||| |||||| ||||||| | ||||||||||||||    
T  8089966 agcttatgaaaataagctgaaaacagcttaggaatatatcataagttgttttcataagctct 8090027  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 35963271 - 35963340
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaaca 151  Q
    ||||||||||||||||||| | |||||||||| | |||||||| | | ||| |||||| ||| |||||||    
T  35963271 agcttatggaaataagctgaaaacaacttatggacatgtcatacgctatttccataagttctcctaaaca 35963340  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 169
Target Start/End: Original strand, 1899187 - 1899270
Alignment:
Q  85 ttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatg 169  Q
    |||||||||||||||| | |||||||||| | |||||||||| | ||||  |||||||||| ||||| |||| ||  ||||||||    
T  1899187 ttatggaaataagctgaaaacaacttatgcacatgtcataagctgtttt-gtaagctcttcaaaacagtctcacatatgtttatg 1899270  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 172
Target Start/End: Original strand, 4619739 - 4619827
Alignment:
Q  84 cttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtca 172  Q
    |||||||||||||| || |  || |||||||| ||||||| || | |||||||||||||| | ||||| | | ||||||| ||||||||    
T  4619739 cttatggaaataaggtgaaaccagcttatgaacatgtcattagttgttttcataagctctcccaaacagtgttgcaagtgcttatgtca 4619827  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 169
Target Start/End: Original strand, 20553133 - 20553220
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatg 169  Q
    ||||||||||||||| ||| | |||||||||||| ||||| |||| | ||| |||||||||| || |||| |||| |||||| |||||    
T  20553133 agcttatggaaataatctgaaaacaacttatgaacatgtcgtaagctgtttccataagctctcctgaacagtctcacaagtgcttatg 20553220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 36598388 - 36598297
Alignment:
Q  90 gaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 181  Q
    ||||||||||| | ||| |||||||| |||||||||||| ||| ||||||||||   |||||||||| ||| || |||||||| ||| ||||    
T  36598388 gaaataagctgaaaacagcttatgaacatgtcataagatgtttccataagctctctcaaacaatctcacaattgcttatgtcagtagttaag 36598297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 26935597 - 26935547
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttt 132  Q
    ||||||||||||||||||| | ||| ||||||||||| |||||||||||||    
T  26935597 agcttatggaaataagctgaaaacagcttatgaatatttcataagatcttt 26935547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 183
Target Start/End: Original strand, 33894660 - 33894758
Alignment:
Q  85 ttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataagct 183  Q
    |||| ||||||||||| | |||||||||| | |||||||| | | ||||||||||||||   ||||| |||| |||||| |||||||| | ||||||||    
T  33894660 ttattgaaataagctgaaaacaacttatggacatgtcatatgctgttttcataagctctcacaaacagtctcacaagtgcttatgtcatttgataagct 33894758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 34754850 - 34754749
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataag 181  Q
    |||| |||||||||||||| | |||||||||     ||||||||||| ||||| ||||||||   ||||| ||||  |||||||| ||||||||||||||    
T  34754850 agctgatggaaataagctgaaaacaacttataggcttgtcataagatgttttcttaagctctctcaaacagtctcataagtgtttgtgtcaatagataag 34754751  T
Q  182 ct 183  Q
    ||    
T  34754750 ct 34754749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 176
Target Start/End: Complemental strand, 39566237 - 39566153
Alignment:
Q  92 aataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatag 176  Q
    ||||||||| | |||||||||| | |||| |||| || ||| |||||||||||||||||  |||||||  |||||||| ||||||    
T  39566237 aataagctgaaaacaacttatggacatgtgataaaatgtttccataagctcttctaaactgtctcgcagatgtttatgccaatag 39566153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 183
Target Start/End: Complemental strand, 25670626 - 25670525
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttct-aaacaatctcgcaagtgtttatgtcaatagataa 180  Q
    ||||| || |||||||||| | |||| |||| || |||||||||| | |||||||||| | |||| ||||| |||| |||| | ||||||||||||||||    
T  25670626 agcttgtgaaaataagctgaaaacaatttattaacatgtcataagttgttttcataagtt-ttctcaaacagtctcacaagagcttatgtcaatagataa 25670528  T
Q  181 gct 183  Q
    |||    
T  25670527 gct 25670525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 180
Target Start/End: Original strand, 21247965 - 21248054
Alignment:
Q  91 aaataagctggatacaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatgtcaatagataa 180  Q
    |||||||||  | |||||||||||| |||||||||| | ||| ||||| |||||  |||||| ||| ||| ||||||| ||| |||||||    
T  21247965 aaataagcttaaaacaacttatgaacatgtcataagttatttccataaactctttaaaacaaactcacaactgtttatatcactagataa 21248054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 36537960 - 36538025
Alignment:
Q  104 acaacttatgaatatgtcataagatcttttcataagctcttctaaacaatctcgcaagtgtttatg 169  Q
    |||||||||||| |||||||||| | ||| |||||| |||   |||||||||| ||||||||||||    
T  36537960 acaacttatgaacatgtcataagttgtttccataagttctctcaaacaatctcacaagtgtttatg 36538025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 143
Target Start/End: Original strand, 46082066 - 46082127
Alignment:
Q  82 agcttatggaaataagctggatacaacttatgaatatgtcataagatcttttcataagctct 143  Q
    |||||||| |||||||||| | ||||||||||   |||||||||| | ||||||||||||||    
T  46082066 agcttatgaaaataagctgaaaacaacttatggtcatgtcataagttgttttcataagctct 46082127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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