View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_67 (Length: 353)
Name: NF8810A_low_67
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_67 |
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Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 31784453 - 31784801
Alignment:
| Q |
1 |
agccatcaagacaggaaaaatcacagactcgcatggacgagaagttagtgtaaacaatgcaatatttgttttttctttctcaggttgccaaaatagtttg |
100 |
Q |
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| T |
31784453 |
agccatcaagacaggaaaaatcacagactcgcatggacgagaagttagtgcaaacaatgcaatatttgttttttctttctcaggttaccaaaatagtttg |
31784552 |
T |
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| Q |
101 |
atgcaaacaagggaaccttccaactattatgaggaaagaataatgagtgtaaggggcggaggtatcaagataaaagttgaacatatggttagagacatca |
200 |
Q |
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| T |
31784553 |
atgcaaacaagggaaccttccaactattctgaggaaagaatgctgagtgtacggggcggaggtatcaagatcaaagttgaacatatggttagagacatca |
31784652 |
T |
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| Q |
201 |
gaaacaaaaacactggtgtagctaacaattcaataaatgtcattcctaatctaaatttcataaacaaacgaaaattgattggtgacaatgaacttcatga |
300 |
Q |
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| T |
31784653 |
gaaaccaaagcatcggtgtacctaacaattcaataaacatcattcctaatctaaatttcataaacaaacgaaaattgattggtgacaatgaacttcacga |
31784752 |
T |
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| Q |
301 |
tccctatttacttgcagatacggctaaaaaggcgcatacaacaccaaac |
349 |
Q |
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| T |
31784753 |
tccccatttactcgcagatgcggctaaaagggcacatacaacatcaaac |
31784801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 30 - 303
Target Start/End: Complemental strand, 19631893 - 19631618
Alignment:
| Q |
30 |
cgcatggacgagaagttagtgtaaacaatgcaatatttgttttttctttctcaggttgccaaaatagtttgatgcaaacaagggaaccttccaactatta |
129 |
Q |
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| T |
19631893 |
cgcatggacgagaagttagtgtaaacaatgtactatttgttttttctttctcaggttgccaaaatagtttgatgcaaacaagggaaccttccaactatta |
19631794 |
T |
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| Q |
130 |
tgaggaaa--gaataatgagtgtaaggggcggaggtatcaagataaaagttgaacatatggttagagacatcagaaacaaaaacactggtgtagctaaca |
227 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||||||| |
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| T |
19631793 |
tgaggaaaaagaataataagtgtaaggggcggaggtatcaagataaaagttgaacatatggttagagacatcagaaaccaaagcatcggtgtagctaaca |
19631694 |
T |
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| Q |
228 |
attcaataaatgtcattcctaatctaaatttcataaacaaacgaaaattgattggtgacaatgaacttcatgatcc |
303 |
Q |
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| T |
19631693 |
attcaataaatgtcattcctaatctaaatttcataaacaaacgaaaattgattggtgacaatgaacttcacgatcc |
19631618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 19633758 - 19633725
Alignment:
| Q |
1 |
agccatcaagacaggaaaaatcacagactcgcat |
34 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
19633758 |
agccatcaagacaggaaaaatcacagactcgcat |
19633725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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