View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_70 (Length: 351)
Name: NF8810A_low_70
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_70 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 13 - 345
Target Start/End: Complemental strand, 3602536 - 3602196
Alignment:
| Q |
13 |
atactaaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtactaaatttgaacccttattaata--- |
109 |
Q |
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| T |
3602536 |
atactaaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtagtaaatttgaacccttattaataata |
3602437 |
T |
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| Q |
110 |
tattgtattatgtgtaagttttcattgtaagaaa-caatatagttaagaacctatttaatattttttat----tccaaaaataggtgatagtgagagggc |
204 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
3602436 |
tattgtattatgtgtaagttttcattgtaagaaaacaatatagttaagaacctatttaatattttttatatattcctaaaataggtgatagtgagagggc |
3602337 |
T |
|
| Q |
205 |
agtgaaggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgtgtta |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3602336 |
agtgaaggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgtatta |
3602237 |
T |
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| Q |
305 |
gagaaattgcaaccttatttggaaaatggcaaagtgaaacc |
345 |
Q |
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| T |
3602236 |
gagaaattgcaaccttatttggaaaatggcaaagtgaaacc |
3602196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 13 - 341
Target Start/End: Complemental strand, 3598376 - 3598043
Alignment:
| Q |
13 |
atactaaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtactaaatttgaacccttattaatatat |
112 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| | |
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| T |
3598376 |
atacaaaggagaattatgaagaaattactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtattaaatttgaatttttattaatatgt |
3598277 |
T |
|
| Q |
113 |
tgtattatgtgtaagttttcattgtaagaaa-caatatagttaagaacctatttaatattttttat----tccaaaaataggtgatagtgagagggcagt |
207 |
Q |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
3598276 |
tgtataatgtgtaagttttcattgtaagaaaacaatatagttaagaacctatttaatattttttatatattccaaaaataggtgatagtgagagggcagt |
3598177 |
T |
|
| Q |
208 |
gaaggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgtgttagag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
3598176 |
gaaggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagcagtgttagag |
3598077 |
T |
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| Q |
308 |
aaattgcaaccttatttggaaaatggcaaagtga |
341 |
Q |
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| T |
3598076 |
aaattgcaaccttatttggaaaatggcagagtga |
3598043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 13 - 345
Target Start/End: Complemental strand, 3595151 - 3594814
Alignment:
| Q |
13 |
atactaaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtactaaatttgaacccttattaatatat |
112 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| | |
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| T |
3595151 |
atacaaaggagaattatgaagaaattactgaaaagtttgatgtggtgtatgatgcagtaggtaagatatttgtattaaatttgaatttttattaatatgt |
3595052 |
T |
|
| Q |
113 |
tgtattatgtgtaagttttcattgta-agaaacaatatagttaagaacctatttaatattttttat----tccaaaaataggtgatagtgagagggcagt |
207 |
Q |
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||||| |||||||||||||||||||| | ||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||| | |
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| T |
3595051 |
tgtataatgtgtaagttttcattgtataaaaacaatatagttaaaaacctattaaatattttttatatattccaaaaataggtgatagtgagagggcact |
3594952 |
T |
|
| Q |
208 |
gaaggctgccaatgaaggaggaaaagttgtgacaatactaccacctggaactccaccagctatccctttcttactcacttcagatggagctgtgttagag |
307 |
Q |
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|||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3594951 |
gaaggctgtaaatgaaggaggaaaatttttgacaatactaccacctggaactccaccagctatcccttttgcactcacttcagatggagctgtgttagag |
3594852 |
T |
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| Q |
308 |
aaattgcaaccttatttggaaaatggcaaagtgaaacc |
345 |
Q |
| |
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|||||| ||||||| ||||||||||||||||||||||| |
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| T |
3594851 |
aaattgaaaccttacttggaaaatggcaaagtgaaacc |
3594814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 265 - 345
Target Start/End: Original strand, 3583585 - 3583665
Alignment:
| Q |
265 |
agctatccctttcttactcacttcagatggagctgtgttagagaaattgcaaccttatttggaaaatggcaaagtgaaacc |
345 |
Q |
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||||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||| ||||||| |
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| T |
3583585 |
agctatcactttcttactcacttcagatggagcagtgttagagaaattgaaaccttacttggaaaatggcaaactgaaacc |
3583665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 79
Target Start/End: Original strand, 12877013 - 12877079
Alignment:
| Q |
13 |
atactaaggagaattatgaagaacttactgaaaagtttgatgtggtgtatgatgcagtaggtaagat |
79 |
Q |
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|||| |||||||||| |||||| || |||| |||||||||||||||| |||| ||||||||||||| |
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| T |
12877013 |
atacaaaggagaattttgaagacctgcctgagaagtttgatgtggtgtttgatacagtaggtaagat |
12877079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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