View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_77 (Length: 344)
Name: NF8810A_low_77
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_77 |
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Alignment Details
Target: chr7 (Bit Score: 307; Significance: 1e-173; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 45282310 - 45282648
Alignment:
| Q |
1 |
aagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgttt |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
45282310 |
aagacaattgcggtagtactgtctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctccttggttt |
45282409 |
T |
|
| Q |
101 |
ctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggata |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282410 |
ctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggata |
45282509 |
T |
|
| Q |
201 |
atcaattaattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaatgaa |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45282510 |
atcaattaattagtaatttcgatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaatgaa |
45282609 |
T |
|
| Q |
301 |
ttttgagagtgatgccactttttctcatatactgtttct |
339 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||| |
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| T |
45282610 |
ttttgagagtgatgccactttttctcatatactctttct |
45282648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 45274067 - 45274405
Alignment:
| Q |
1 |
aagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgttt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
45274067 |
aagacaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccacgatatggcaacccaccaaagcagacatatctcctacgttt |
45274166 |
T |
|
| Q |
101 |
ctaaatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggata |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
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| T |
45274167 |
ctaaatgccacagcttggtgaccatcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccctattgcggtgttggctgcacgcatggata |
45274266 |
T |
|
| Q |
201 |
atcaattaattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagttatgttttcttcaaaaatgaa |
300 |
Q |
| |
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|||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||| | | ||||||||||| ||||||||||||||||||||| || |
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| T |
45274267 |
atcaattaattagtaatttcgatcacactggctatatatgtcaatgttatatgtatatatttctcttttcaatgcgagttatgttttcttcaaaaataaa |
45274366 |
T |
|
| Q |
301 |
ttttgagagtgatgccactttttctcatatactgtttct |
339 |
Q |
| |
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||||||||||||||| ||||||||| ||||||| ||||| |
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| T |
45274367 |
ttttgagagtgatgctactttttcttatatactctttct |
45274405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 4 - 252
Target Start/End: Original strand, 45293653 - 45293904
Alignment:
| Q |
4 |
acaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgtttcta |
103 |
Q |
| |
|
||||||||||||| | ||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45293653 |
acaattgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttcta |
45293752 |
T |
|
| Q |
104 |
aatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatc |
203 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |
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| T |
45293753 |
aatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgcatggatgatc |
45293852 |
T |
|
| Q |
204 |
aattaattagtaatttcaatcacattggc---tatatatgtcaatgttatat |
252 |
Q |
| |
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||||||||||||| ||| |||||| ||| ||||| |||||||||||||| |
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| T |
45293853 |
aattaattagtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45293904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 4 - 252
Target Start/End: Original strand, 45302613 - 45302864
Alignment:
| Q |
4 |
acaattgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgtttcta |
103 |
Q |
| |
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||||||||||||| | ||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45302613 |
acaattgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacccaggatatggcaacccaccaaagcagacatatctccttggtttcta |
45302712 |
T |
|
| Q |
104 |
aatgccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatc |
203 |
Q |
| |
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|||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||| |
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| T |
45302713 |
aatgccacagcttggtgaccagcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccaatgcggtgttggctgcatgcatggatgatc |
45302812 |
T |
|
| Q |
204 |
aattaattagtaatttcaatcacattggc---tatatatgtcaatgttatat |
252 |
Q |
| |
|
||||||||||||| ||| |||||| ||| ||||| |||||||||||||| |
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| T |
45302813 |
aattaattagtaacttcgatcacaccggctattatatgtgtcaatgttatat |
45302864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 8 - 333
Target Start/End: Original strand, 45270547 - 45270870
Alignment:
| Q |
8 |
ttgcggtagtactgcctgttgctttgaacatacaagctgtcttggtaacccaggatatggcaacccaccaaagcagacatatctcctacgtttctaaatg |
107 |
Q |
| |
|
||||||||| | ||||||||| ||||||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
45270547 |
ttgcggtagaattgcctgttggtttgaacgtacaaagtgtcttggtaacctacgatatggcaacccaccaaagcagacatatctcctatgtttctaaatg |
45270646 |
T |
|
| Q |
108 |
ccacggcttggtgaccatcaggaccggctgtgttttcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcattcatggataatcaatt |
207 |
Q |
| |
|
|||| ||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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|
| T |
45270647 |
ccacagcttgcataccggcaggaccggctgtgttctcaaatgtcattgcctttccaatgaaccccattgcggtgttggctgcatgcatggatgatcaatt |
45270746 |
T |
|
| Q |
208 |
aattagtaatttcaatcacattggctatatatgtcaatgttatatgtgtatctatatcttttcaatgttagtt-atgttttcttcaaaaatgaattttga |
306 |
Q |
| |
|
||||||||| ||| || ||| |||||||||| | ||| | | | ||| |||||||||||||||| |||| ||||||| |||||||||||||||||| |
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| T |
45270747 |
aattagtaacttctataacaccggctatatatatgtatg---tgtctatatatatatcttttcaatgtgagttaatgtttttttcaaaaatgaattttga |
45270843 |
T |
|
| Q |
307 |
gagtgatgccactttttctcatatact |
333 |
Q |
| |
|
||||||||| ||| |||| ||| |||| |
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| T |
45270844 |
gagtgatgctactatttcacatctact |
45270870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 45293957 - 45294022
Alignment:
| Q |
263 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcat |
328 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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|
| T |
45293957 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcat |
45294022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 263 - 328
Target Start/End: Original strand, 45302917 - 45302982
Alignment:
| Q |
263 |
atcttttcaatgttagttatgttttcttcaaaaatgaattttgagagtgatgccactttttctcat |
328 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||| |
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|
| T |
45302917 |
atcttttcaatgtgagttatgttttcttcaaaaatgaattttgagagtgatgttactatttctcat |
45302982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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