View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_82 (Length: 337)

Name: NF8810A_low_82
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_82
NF8810A_low_82
[»] chr3 (1 HSPs)
chr3 (23-337)||(41792983-41793297)


Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 23 - 337
Target Start/End: Original strand, 41792983 - 41793297
Alignment:
Q  23 gtagatacgaatcccttggaagaatcctaatttgtgtctttgtctcaattctcatctgttcaattatttttccaccttttcctagcaatgacccaacatg 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41792983 gtagatacgaatcccttggaagaatcctaatttgtgtctttgtctcaattctcatctgttcaattatttttccaccttttcctagcaatgacccaacatg 41793082  T
Q  123 catttccgaaacaaccaacctcctagaaacacgcttcccaccaccacctcttccgccgccgtagtcctcctcatcctcaaaccccggatcgttctccaac 222  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41793083 cattttcgaaacaaccaacctactagaaacacgcttcccaccaccacctcttccgccgccgtagtcctcctcatcctcaaaccccggatcgttctccaac 41793182  T
Q  223 agcctctcatgaatgagaagcaacgcctcctgcgccggcgaaaactgtggcattctaccatccggatcacggcggcgcgtgtcagaaatctcgataatcc 322  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41793183 agcctctcatgaatgagaagcaacgcctcctgcgccggcgaaaactgtggcattctaccatccggatcacggcggcgcgtgtcagaaatctcgataatcc 41793282  T
Q  323 tctcctcatctccag 337  Q
    |||||||||||||||    
T  41793283 tctcctcatctccag 41793297  T

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