View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8810A_low_85 (Length: 334)
Name: NF8810A_low_85
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_85 |
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| [»] scaffold0985 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 115 - 299
Target Start/End: Complemental strand, 21695274 - 21695090
Alignment:
| Q |
115 |
atatcattaaaatctcccatcagacatcatggtaaattaacatgtccagcaaggctacgaataaatttccatgagtctcttcttccactaacttctggat |
214 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||||| ||||| || |||||||||| ||||||||| ||||| ||||||||||||| || || |||| ||| |
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| T |
21695274 |
atatcattaaaatctcccattaaacaccatggtagattaatttgcccagcaaggccacgaataaagttccacgagtctcttcttcgaccaatttctagat |
21695175 |
T |
|
| Q |
215 |
acccataaaagcatgtggaaatccaagcaccacgccttccttcttcaattttagcattaatatgattggttagataattaacaat |
299 |
Q |
| |
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||||||| |||| ||| | |||||||| | | ||| ||||||||||||| ||| ||||||| || | | |||||||||||| |
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|
| T |
21695174 |
acccatagaagcctgtaaacatccaagcttctccacttacttcttcaatttttgcactaatatggttagctgtataattaacaat |
21695090 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 283
Target Start/End: Complemental strand, 10512269 - 10512101
Alignment:
| Q |
115 |
atatcattaaaatctcccatcagacatcatggtaaattaacatgtccagcaaggctacgaataaatttccatgagtctcttcttccactaacttctggat |
214 |
Q |
| |
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||||| |||||||| ||||||||||| || ||| |||||| |||| |||||| | | | || || ||||| || |||||||||| | | |||||||| |
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|
| T |
10512269 |
atatcgttaaaatcccccatcagacaccaaggtgaattaatctgtctagcaagaccatggatgaaattccacgaatctcttcttctcccgatttctggat |
10512170 |
T |
|
| Q |
215 |
acccataaaagcatgtggaaatccaagcaccacgccttccttcttcaattttagcattaatatgattgg |
283 |
Q |
| |
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| |||||||| | |||| | |||||||| ||||| || |||||||||||||||| ||||||| |||| |
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|
| T |
10512169 |
atccataaaaacctgtgaatatccaagccccacgactgacttcttcaattttagcgctaatatggttgg |
10512101 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 98 - 221
Target Start/End: Complemental strand, 20584166 - 20584043
Alignment:
| Q |
98 |
tctcttcagcatgtaagatatcattaaaatctcccatcagacatcatggtaaattaacatgtccagcaaggctacgaataaatttccatgagtctcttct |
197 |
Q |
| |
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|||| |||||||| | ||||||||||||||| ||||| | ||| ||||||| ||| | ||||||||||| |||||||| || ||||||||||||||||| |
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|
| T |
20584166 |
tctcatcagcatggaggatatcattaaaatcccccattaaacaccatggtagattgatttgtccagcaagactacgaatgaaattccatgagtctcttct |
20584067 |
T |
|
| Q |
198 |
tccactaacttctggatacccata |
221 |
Q |
| |
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|| || || ||||||||||||||| |
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| T |
20584066 |
tctaccaatttctggatacccata |
20584043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 8721153 - 8721047
Alignment:
| Q |
118 |
tcattaaaatctcccatcagacatcatggtaaattaacatgtccagcaaggctacgaataaatttccatgagtctcttcttccactaacttctggatacc |
217 |
Q |
| |
|
||||||||||| ||||| ||||| || |||||||||| || | ||||| | ||||| ||| ||||| ||||||||||||| |||| |||| ||||| | |
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|
| T |
8721153 |
tcattaaaatcccccattagacaccaaggtaaattaatattgcttgcaagacgacgaagaaaattccaagagtctcttcttctactagcttccggatagc |
8721054 |
T |
|
| Q |
218 |
cataaaa |
224 |
Q |
| |
|
||||||| |
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|
| T |
8721053 |
cataaaa |
8721047 |
T |
|
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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 181 - 331
Target Start/End: Original strand, 9540673 - 9540822
Alignment:
| Q |
181 |
ttccatgagtctcttcttccactaacttctggatacccataaaagcatgtggaaatccaagcaccacgccttccttcttcaattttagcattaatatgat |
280 |
Q |
| |
|
|||||||| | |||||||| |||||||| |||||||||||||||||||||| | |||||||||||| || ||||||||||| ||||| ||||||||| |
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|
| T |
9540673 |
ttccatgaatttcttcttctactaacttttggatacccataaaagcatgtgaatatccaagcacca-ttatttcttcttcaattctagcactaatatgat |
9540771 |
T |
|
| Q |
281 |
tggttagataattaacaatgctataattgattgttttacgccagaataaag |
331 |
Q |
| |
|
||| | ||| |||||| ||| | |||| ||||||||||||||| |||| |
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|
| T |
9540772 |
tggaagaacaataaacaatactacagttgagtgttttacgccagaacaaag |
9540822 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 98 - 197
Target Start/End: Original strand, 8971975 - 8972074
Alignment:
| Q |
98 |
tctcttcagcatgtaagatatcattaaaatctcccatcagacatcatggtaaattaacatgtccagcaaggctacgaataaatttccatgagtctcttct |
197 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||||| | ||| ||||||| | ||| || |||||||| |||||||| || ||||||||||||||||| |
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|
| T |
8971975 |
tctcatcagcatgtaggatatcattaaaatctcccattaaacaccatggtatagtaatttgaccagcaagactacgaatgaaattccatgagtctcttct |
8972074 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 114 - 308
Target Start/End: Original strand, 14509847 - 14510041
Alignment:
| Q |
114 |
gatatcattaaaatctcccatcagacatcatggtaaattaacatgtccagcaaggctacgaataaatttccatgagtctcttcttccactaacttctgga |
213 |
Q |
| |
|
||||||||||||||||||||| |||| || |||||||||| |||| |||||| | |||||||| ||||| ||||||||||||| | || |||||| |
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|
| T |
14509847 |
gatatcattaaaatctcccatttgacaccaaggtaaattaatttgtctagcaagaccccgaataaaattccaagagtctcttcttctagcaatttctggg |
14509946 |
T |
|
| Q |
214 |
tacccataaaagcatgtggaaatccaagcaccacgccttccttcttcaattttagcattaatatgattggttagataattaacaatgctataatt |
308 |
Q |
| |
|
|| || || |||| ||| || |||| |||| ||| || ||||||||||||||||| ||||||| || | |||||||||||||||| |||| |
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|
| T |
14509947 |
taaccgtagaagcctgtaaaagtccacgcactacgactaacttcttcaattttagcactaatatggttagccgaataattaacaatgctacaatt |
14510041 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 15786486 - 15786380
Alignment:
| Q |
118 |
tcattaaaatctcccatcagacatcatggtaaattaacatgtccagcaaggctacgaataaatttccatgagtctcttcttccactaacttctggatacc |
217 |
Q |
| |
|
||||||||||| ||||| ||||| || |||||||||| || | ||||| | ||||| ||| ||||| ||||||||||||| |||| |||| ||||| | |
|
|
| T |
15786486 |
tcattaaaatcccccattagacaccagggtaaattaatattgcttgcaagacgacgaagaaaattccaagagtctcttcttctactagcttccggatagc |
15786387 |
T |
|
| Q |
218 |
cataaaa |
224 |
Q |
| |
|
||||||| |
|
|
| T |
15786386 |
cataaaa |
15786380 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 300
Target Start/End: Complemental strand, 34931611 - 34931429
Alignment:
| Q |
118 |
tcattaaaatctcccatcagacatcatggtaaattaacatgtccagcaaggctacgaataaatttccatgagtctcttcttccactaacttctggatacc |
217 |
Q |
| |
|
||||||||||| |||||||| || || |||||||| | |||| |||||| | ||||||||| ||||| || |||||||||| || || || |||||| | |
|
|
| T |
34931611 |
tcattaaaatcccccatcaggcaccaaggtaaatttatctgtctagcaagaccacgaataaaattccaagaatctcttcttctaccaatttttggataac |
34931512 |
T |
|
| Q |
218 |
cataaaagcatgtggaaatccaagcaccacgccttccttcttcaattttagcattaatatgattggttagataattaacaatg |
300 |
Q |
| |
|
| || || | |||| | ||||| || || || ||||||||||||||||| ||||||| || | | ||||||||||||| |
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|
| T |
34931511 |
cgtagaaccctgtgaacatccatgccatgcgactgacttcttcaattttagcactaatatggttagctgaataattaacaatg |
34931429 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 218
Target Start/End: Complemental strand, 2436059 - 2435959
Alignment:
| Q |
118 |
tcattaaaatctcccatcagacatcatggtaaattaacatgtccagcaaggctacgaataaatttccatgagtctcttcttccactaacttctggatacc |
217 |
Q |
| |
|
||||||||||| |||||||| || || ||||| || | ||| ||||| | ||||||||| ||||| || |||||||||| |||||||||||||||| |
|
|
| T |
2436059 |
tcattaaaatcccccatcaggcaccaaggtaagtttatcggtctggcaagaccacgaataaaattccaagaatctcttcttctgctaacttctggatacc |
2435960 |
T |
|
| Q |
218 |
c |
218 |
Q |
| |
|
| |
|
|
| T |
2435959 |
c |
2435959 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 27154164 - 27154116
Alignment:
| Q |
31 |
cttgaacagtttgtctgaatcccctaataagccagttaggttggatagc |
79 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27154164 |
cttgaacaatttgtctgaatcccctaataagccagttaggttggatagc |
27154116 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 114 - 217
Target Start/End: Original strand, 5616352 - 5616455
Alignment:
| Q |
114 |
gatatcattaaaatctcccatcagacatcatggtaaattaacatgtccagcaaggctacgaataaatttccatgagtctcttcttccactaacttctgga |
213 |
Q |
| |
|
||||||||||||||||||||| || || || |||||||| | |||| |||||| | |||||||| ||||| ||||||||||||| | ||||||||||| |
|
|
| T |
5616352 |
gatatcattaaaatctcccattaggcaccaaggtaaatttatttgtctagcaagaccccgaataaaattccaagagtctcttcttctagtaacttctgga |
5616451 |
T |
|
| Q |
214 |
tacc |
217 |
Q |
| |
|
|||| |
|
|
| T |
5616452 |
tacc |
5616455 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0985 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0985
Description:
Target: scaffold0985; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 115 - 278
Target Start/End: Original strand, 1114 - 1277
Alignment:
| Q |
115 |
atatcattaaaatctcccatcagacatcatggtaaattaacatgtccagcaaggctacgaataaatttccatgagtctcttcttccactaacttctggat |
214 |
Q |
| |
|
|||||||||||||| ||||||||||| || |||||||| | |||| |||||| | ||||||||| ||||| || |||| ||||| | ||||||||||| |
|
|
| T |
1114 |
atatcattaaaatcccccatcagacaccaaggtaaatttatctgtctagcaagaccacgaataaaattccaagaatctcctcttctgccaacttctggat |
1213 |
T |
|
| Q |
215 |
acccataaaagcatgtggaaatccaagcaccacgccttccttcttcaattttagcattaatatg |
278 |
Q |
| |
|
| || || || | ||| | |||||||| ||| || ||||||||||||||||| ||||||| |
|
|
| T |
1214 |
aaccgtagaatcctgtaaacatccaagccatacgactaacttcttcaattttagcactaatatg |
1277 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 98 - 323
Target Start/End: Complemental strand, 25132430 - 25132201
Alignment:
| Q |
98 |
tctcttcagcatgtaagatatcattaaaatctcccatcagacatcatggtaaattaacatgtccagcaaggctacgaataaatttccatgagtctcttct |
197 |
Q |
| |
|
|||| ||| ||||||| |||||||| ||||||||||||| ||| || ||||||||||||| || || | ||||||| |||||||| | |||||| |
|
|
| T |
25132430 |
tctcctcatcatgtaaaatatcattgaaatctcccatcaaacaccacaacaaattaacatgtctagtaataatgtgaataaagttccatgaatatcttct |
25132331 |
T |
|
| Q |
198 |
tccactaacttctggata----cccataaaagcatgtggaaatccaagcaccacgccttccttcttcaattttagcattaatatgattggttagataatt |
293 |
Q |
| |
|
|| ||||||||| |||| ||||||||| |||| | |||||| |||| || |||||||||||| |||||||| | |||||||| | |||||| |
|
|
| T |
25132330 |
tcttctaacttctagatatatacccataaaaaattgtgaatatccaaacacctcgacttccttcttcacttttagcactgatatgattagaagaataatt |
25132231 |
T |
|
| Q |
294 |
aacaatgctataattgattgttttacgcca |
323 |
Q |
| |
|
|||||| ||| | |||| ||||||| |||| |
|
|
| T |
25132230 |
aacaatactaaagttgagtgttttatgcca |
25132201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 310
Target Start/End: Original strand, 238326 - 238518
Alignment:
| Q |
118 |
tcattaaaatctcccatcagacatcatggtaaattaacatgtccagcaaggctacgaataaatttccatgagtctcttcttccactaacttctggatacc |
217 |
Q |
| |
|
|||||||| |||||||| ||||| || |||||| | | || | ||||||||| |||| || ||||| |||||||| |||| | || |||||| || | |
|
|
| T |
238326 |
tcattaaagtctcccattagacaccacggtaaagtgatttgcctagcaaggctctgaatgaaattccaagagtctctccttctagcaatttctgggtagc |
238425 |
T |
|
| Q |
218 |
cataaaagcatgtggaaatccaagcaccacgccttccttcttcaattttagcattaatatgattggttagataattaacaatgctataattga |
310 |
Q |
| |
|
||||||||| ||| ||||||| || | ||| || |||||||||| |||||| | || ||||| | | |||||||||||| ||| |||||| |
|
|
| T |
238426 |
cataaaagcctgtaaaaatccatgccctacgactaacttcttcaatcttagcacttatgtgattagctgaataattaacaatactacaattga |
238518 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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