View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_88 (Length: 329)
Name: NF8810A_low_88
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_88 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 40660806 - 40660482
Alignment:
| Q |
1 |
tcacagaagaaataggaagtaat-gaaaaggcagcagccataaccaagatcaacatcttagagatataggagttatagattacgcgctagttttttacta |
99 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40660806 |
tcacagaagaaataggaagcaatagaaaaggcagcagccataaccaagatcaacatcttagagatataggagttatagattacgcgctagttttttacta |
40660707 |
T |
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| Q |
100 |
ctacctccggtttgttatacaatagacatcatgtacatttgttatgattgcaattaagcatgaagcacatgttaatgaggccagtctgctactttttgtc |
199 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40660706 |
ctacctccggttttttatacaatagacatcatgtacatttgttatgattgcaattaagcatgaagcacatgttaatgaggccagtctgctactttttgtc |
40660607 |
T |
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| Q |
200 |
tacttgattgtggttgtctttgttatttgatttcgagtaagttactcaaggggaaatagaagtgcagattattctggatttagctcaatatttggtttgg |
299 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40660606 |
cacttgattgtggttgtctttgttatttgatttcgagcaagttactcaaggggaaatagaagtgcagattattctggatttagctcaatatttggtttgg |
40660507 |
T |
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| Q |
300 |
tttggttttgtgctgtctaagtggaaacag |
329 |
Q |
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|||| ||||||||||||||||||||| |
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| T |
40660506 |
tttg-----gtgctgtctaagtggaaacag |
40660482 |
T |
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