View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8810A_low_89 (Length: 329)
Name: NF8810A_low_89
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8810A_low_89 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 44535079 - 44535336
Alignment:
| Q |
1 |
aagaatatagaggaaaaggttactaccaacatgagggagaagatgagaaactcatcaacttcattatcatatgatcataatgaggtaaagaaagttgagg |
100 |
Q |
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| T |
44535079 |
aagaaaatagaggaaaaggttactaccaacatgagggagaagatgagaaactcatcaacttcattatcatatgatcataatgaggtaaagaaagttgagg |
44535178 |
T |
|
| Q |
101 |
actcctttgaaacaaataagaagctagagaggaagactacagaagacatcaatgccagtgctgatgccttcatcaagaatttcaggaaacaactcgtgat |
200 |
Q |
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| T |
44535179 |
actcctttgaaacaaataagaagctagagaggaagactacagaagacatcaatgccagtgctgatgccttcatcaagaatttcaggaaacaactcgtgat |
44535278 |
T |
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| Q |
201 |
tcaaaggcttcaatccattgagaattatgagaaaatgcttgcaaggggtctctagcac |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44535279 |
tcaaaggcttcaatccattgagaattatgagaaaatgcttgcaaggggtctctagcac |
44535336 |
T |
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Back To:
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Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 141 - 248
Target Start/End: Complemental strand, 2579963 - 2579856
Alignment:
| Q |
141 |
agaagacatcaatgccagtgctgatgccttcatcaagaatttcaggaaacaactcgtgattcaaaggcttcaatccattgagaattatgagaaaatgctt |
240 |
Q |
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|||||| |||||||| ||||||||||||||||| ||||| || ||| | || || || |||| ||||||||||| |||||||||||||||||||||||| |
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| T |
2579963 |
agaagatatcaatgctagtgctgatgccttcattaagaactttaggcagcagcttatgcttcagaggcttcaatctattgagaattatgagaaaatgctt |
2579864 |
T |
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| Q |
241 |
gcaagggg |
248 |
Q |
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| T |
2579863 |
gctagggg |
2579856 |
T |
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