View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8810A_low_9 (Length: 535)

Name: NF8810A_low_9
Description: NF8810A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8810A_low_9
NF8810A_low_9
[»] chr4 (1 HSPs)
chr4 (1-193)||(41099736-41099928)
[»] chr7 (21 HSPs)
chr7 (195-493)||(38187038-38187335)
chr7 (195-502)||(38149156-38149457)
chr7 (212-329)||(38156945-38157062)
chr7 (211-366)||(38165524-38165674)
chr7 (216-270)||(35082645-35082699)
chr7 (216-270)||(35098909-35098963)
chr7 (216-275)||(43028393-43028452)
chr7 (224-270)||(35072580-35072626)
chr7 (454-535)||(35072807-35072888)
chr7 (454-535)||(35099144-35099225)
chr7 (225-294)||(45999782-45999851)
chr7 (216-264)||(35092114-35092162)
chr7 (244-360)||(36744160-36744276)
chr7 (248-332)||(38285502-38285586)
chr7 (388-419)||(35072741-35072772)
chr7 (388-419)||(35099078-35099109)
chr7 (388-419)||(42797408-42797439)
chr7 (388-419)||(43028252-43028283)
chr7 (389-419)||(38321850-38321880)
chr7 (388-429)||(37884088-37884129)
chr7 (454-490)||(35082880-35082916)
[»] chr5 (2 HSPs)
chr5 (216-270)||(9664434-9664488)
chr5 (454-498)||(9664209-9664253)
[»] chr8 (1 HSPs)
chr8 (84-193)||(1151948-1152061)
[»] chr2 (2 HSPs)
chr2 (246-329)||(12408966-12409049)
chr2 (246-329)||(12421026-12421109)
[»] chr6 (4 HSPs)
chr6 (218-293)||(25575240-25575315)
chr6 (218-293)||(26103619-26103694)
chr6 (388-417)||(4163599-4163628)
chr6 (388-417)||(4225220-4225249)
[»] chr3 (2 HSPs)
chr3 (8-149)||(29752951-29753099)
chr3 (225-294)||(2222885-2222954)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 41099736 - 41099928
Alignment:
Q  1 taaatgaaaaaaccacaaaatcattcaagaacgaaattaaaaaagatagataatctgatttaaaaacatgcaagcccatgttggcatacaaggttcttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41099736 taaatgaaaaaaccacaaaatcattcaagaacgaaattaaaaaagatagataatctgatttaaaaacatgcaagcccatgttggcatacaaggttcttga 41099835  T
Q  101 gaaattcaagtacactgttcaaaaataaaatatccgactttcaaatgtccataacaaaattactttaaagcaacataatcaacatttgagatg 193  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41099836 gaaattcaagtacactgttcaaaaataaaatatcagactttcaaatgtccataacaaaattactttaaagcaacataatcaacatttgagatg 41099928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 8e-47; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 195 - 493
Target Start/End: Original strand, 38187038 - 38187335
Alignment:
Q  195 acatcaaagagaaaatatggtttttgagtgactcgcctgtgaagtgcttatgatcatagataaattctcaatatgtc-gtaaagttgcaactggaccaaa 293  Q
    |||| ||||||||||||||||||  |||| |||| ||||||||||| |||||||||||||||||||||||||||||| ||||| |||||| || ||||||    
T  38187038 acattaaagagaaaatatggttt--gagttactcacctgtgaagtggttatgatcatagataaattctcaatatgtcagtaaacttgcaattgaaccaaa 38187135  T
Q  294 gggagatggatttttctctcttttagctgcattccagaagacctttaataaacttggagctgtaacacagatatcacccgtggctgtgtgacagctatat 393  Q
    |||| |||||||||||||||| |||||||||||||| || ||||| ||||||||||||||| |||   ||||| |   |||     | ||||  ||||||    
T  38187136 gggacatggatttttctctctattagctgcattccaaaaaaccttcaataaacttggagctttaagggagataactttcgt---catttgaccactatat 38187232  T
Q  394 tcaaaggatgagagattcaatgcatcgatatgtatggggt---aataatgaagatggctatacccacaatcaattattttcaaatgaagcaactttggac 490  Q
    |||||||||   ||||||||||||||||||| |||| |||       || ||||||| ||||| ||||||| |||||||| |||||| ||||||||||||    
T  38187233 tcaaaggatttaagattcaatgcatcgatatctatgcggtgcggggcataaagatggttatactcacaatctattattttgaaatgatgcaactttggac 38187332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 195 - 502
Target Start/End: Original strand, 38149156 - 38149457
Alignment:
Q  195 acatcaaagagaaaatatggtttttgagtgactcgcctgtgaagtgcttatgatcatagataaattctcaatatgtcgtaaagttgcaactggaccaaag 294  Q
    |||||||  ||||||  ||||||||||| ||||| |||||||||||||||||||||||||||||||||  |||||| ||||  | |||| |||||||||     
T  38149156 acatcaaccagaaaacgtggtttttgagcgactcacctgtgaagtgcttatgatcatagataaattctggatatgttgtaatctggcaattggaccaaaa 38149255  T
Q  295 ggagatggatttttctctcttttagctgcattccagaagacctttaataaacttggagctgtaaca-cagatatcacccgtggctgtgtgacagctatat 393  Q
    |||  ||||||||||||||||||||| || |||||||| |||||||||||  |||||||  ||||| || ||     ||||    |||||||  ||||||    
T  38149256 ggatgtggatttttctctcttttagccgcgttccagaaaacctttaataatattggagcattaacatcaaat----tccgtcagggtgtgaccactatat 38149351  T
Q  394 tcaaaggatgagagattcaatgcatcgatatgtatggggtaataatgaagatggctatacccacaatcaattattttcaaatgaagcaactttggactga 493  Q
    |||||||||| |||||||||||||| ||||| |||| |      | | | ||| ||||| ||||||||||||| |||||||||| ||||||||||||||     
T  38149352 tcaaaggatgtgagattcaatgcattgatatctatgcg---tcgaggtaaatgtctatagccacaatcaattaatttcaaatgacgcaactttggactgg 38149448  T
Q  494 taatattca 502  Q
    |||||||||    
T  38149449 taatattca 38149457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 212 - 329
Target Start/End: Original strand, 38156945 - 38157062
Alignment:
Q  212 tggtttttgagtgactcgcctgtgaagtgcttatgatcatagataaattctcaatatgtcgtaaagttgcaactggaccaaagggagatggatttttctc 311  Q
    ||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||| ||||  |||||| |||||||||||||    ||||||| ||    
T  38156945 tggtttttgagtgactcacctgtgaagtgctcataatcatagataaattctcaatatgtagtaatcttgcaattggaccaaagggatgctgatttttttc 38157044  T
Q  312 tcttttagctgcattcca 329  Q
    ||||||||||||||||||    
T  38157045 tcttttagctgcattcca 38157062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 211 - 366
Target Start/End: Original strand, 38165524 - 38165674
Alignment:
Q  211 atggtttttgagtgactcgcctgtgaagtgcttatgatcatagataaattctcaatatgtcgtaaagttgcaactggaccaaagggagatggatttttct 310  Q
    ||||||||||  | |||| | |||||||| || | |||||||  |||||||||||||||| ||||  |||||| ||||||||||||| ||| ||||||||    
T  38165524 atggtttttggttaactcacttgtgaagtactcaagatcataactaaattctcaatatgttgtaatcttgcaattggaccaaagggaaatgtatttttct 38165623  T
Q  311 ctcttttagctgcattccagaagacctttaataaacttggagctgtaacacagata 366  Q
    |||||||||||||||||      ||||| |||||||||||||| |||||| |||||    
T  38165624 ctcttttagctgcattc-----aaccttcaataaacttggagccgtaacaaagata 38165674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 35082645 - 35082699
Alignment:
Q  216 ttttgagtgactcgcctgtgaagtgcttatgatcatagataaattctcaatatgt 270  Q
    ||||| ||||||| |||||||||||  ||||||||||||||||||||||||||||    
T  35082645 ttttgggtgactcacctgtgaagtgagtatgatcatagataaattctcaatatgt 35082699  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 35098909 - 35098963
Alignment:
Q  216 ttttgagtgactcgcctgtgaagtgcttatgatcatagataaattctcaatatgt 270  Q
    ||||| ||||||| |||||||||||  ||||||||||||||||||||||||||||    
T  35098909 ttttgggtgactcacctgtgaagtgagtatgatcatagataaattctcaatatgt 35098963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 216 - 275
Target Start/End: Complemental strand, 43028452 - 43028393
Alignment:
Q  216 ttttgagtgactcgcctgtgaagtgcttatgatcatagataaattctcaatatgtcgtaa 275  Q
    ||||||||||||| ||||||||||||| ||| ||| || |||||||||||||||| ||||    
T  43028452 ttttgagtgactcacctgtgaagtgctgatgttcacagctaaattctcaatatgtggtaa 43028393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 35072580 - 35072626
Alignment:
Q  224 gactcgcctgtgaagtgcttatgatcatagataaattctcaatatgt 270  Q
    ||||| |||||||||||  ||||||||||||||||||||||||||||    
T  35072580 gactcacctgtgaagtgagtatgatcatagataaattctcaatatgt 35072626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 454 - 535
Target Start/End: Original strand, 35072807 - 35072888
Alignment:
Q  454 ccacaatcaattattttcaaatgaagcaactttggactgataatattcattgcacgcatttgcttgcaattcttaaaggtga 535  Q
    ||||| |||||||||||||||||| |||||||||||||| |||| |  |||| || |||  || |||| |||||||||||||    
T  35072807 ccacagtcaattattttcaaatgacgcaactttggactggtaatttctattgaactcatgcgcctgcagttcttaaaggtga 35072888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 454 - 535
Target Start/End: Original strand, 35099144 - 35099225
Alignment:
Q  454 ccacaatcaattattttcaaatgaagcaactttggactgataatattcattgcacgcatttgcttgcaattcttaaaggtga 535  Q
    ||||| |||||||||||||||||| |||||||||||||| |||| |  |||| || |||  || |||| |||||||||||||    
T  35099144 ccacagtcaattattttcaaatgacgcaactttggactggtaatttctattgaactcatgcgcctgcagttcttaaaggtga 35099225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 45999782 - 45999851
Alignment:
Q  225 actcgcctgtgaagtgcttatgatcatagataaattctcaatatgtcgtaaagttgcaactggaccaaag 294  Q
    |||| ||||||||| ||| |||||||||| |||||||||||||||| ||||  ||| || ||||||||||    
T  45999782 actcacctgtgaagggctgatgatcatagctaaattctcaatatgtggtaatcttgtaattggaccaaag 45999851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 35092114 - 35092162
Alignment:
Q  216 ttttgagtgactcgcctgtgaagtgcttatgatcatagataaattctca 264  Q
    ||||| ||||||| |||||||||||  ||||||||||||||||||||||    
T  35092114 ttttgggtgactcacctgtgaagtgagtatgatcatagataaattctca 35092162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 244 - 360
Target Start/End: Original strand, 36744160 - 36744276
Alignment:
Q  244 atgatcatagataaattctcaatatgtcgtaaagttgcaactggaccaaagggagatggatttttctctcttttagctgcattccagaagacctttaata 343  Q
    |||||||||| |||||||||||||||| ||||  || |||  ||||||||||||  |||  ||||||||||   ||| ||||||||||| | ||| ||||    
T  36744160 atgatcatagctaaattctcaatatgtggtaagctttcaataggaccaaagggatgtggtattttctctctcacagccgcattccagaaaatcttcaata 36744259  T
Q  344 aacttggagctgtaaca 360  Q
    |  ||||||| ||||||    
T  36744260 actttggagccgtaaca 36744276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 332
Target Start/End: Original strand, 38285502 - 38285586
Alignment:
Q  248 tcatagataaattctcaatatgtcgtaaagttgcaactggaccaaagggagatggatttttctctcttttagctgcattccagaa 332  Q
    |||||| |||||||||||||||  | ||| |||||| || ||||||| || |||||||||| || ||  ||||||||||||||||    
T  38285502 tcatagctaaattctcaatatgatgaaaacttgcaattgaaccaaagagatatggatttttttcactgatagctgcattccagaa 38285586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 419
Target Start/End: Original strand, 35072741 - 35072772
Alignment:
Q  388 ctatattcaaaggatgagagattcaatgcatc 419  Q
    ||||||||||||||||||||||||||||||||    
T  35072741 ctatattcaaaggatgagagattcaatgcatc 35072772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 419
Target Start/End: Original strand, 35099078 - 35099109
Alignment:
Q  388 ctatattcaaaggatgagagattcaatgcatc 419  Q
    ||||||||||||||||||||||||||||||||    
T  35099078 ctatattcaaaggatgagagattcaatgcatc 35099109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 419
Target Start/End: Complemental strand, 42797439 - 42797408
Alignment:
Q  388 ctatattcaaaggatgagagattcaatgcatc 419  Q
    ||||||||||||||||||||||||||||||||    
T  42797439 ctatattcaaaggatgagagattcaatgcatc 42797408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 419
Target Start/End: Complemental strand, 43028283 - 43028252
Alignment:
Q  388 ctatattcaaaggatgagagattcaatgcatc 419  Q
    ||||||||||||||||||||||||||||||||    
T  43028283 ctatattcaaaggatgagagattcaatgcatc 43028252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 419
Target Start/End: Complemental strand, 38321880 - 38321850
Alignment:
Q  389 tatattcaaaggatgagagattcaatgcatc 419  Q
    |||||||||||||||||||||||||||||||    
T  38321880 tatattcaaaggatgagagattcaatgcatc 38321850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 429
Target Start/End: Complemental strand, 37884129 - 37884088
Alignment:
Q  388 ctatattcaaaggatgagagattcaatgcatcgatatgtatg 429  Q
    ||||||||||||||||| |||||||||||||| |||| ||||    
T  37884129 ctatattcaaaggatgaaagattcaatgcatcaatatatatg 37884088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 454 - 490
Target Start/End: Original strand, 35082880 - 35082916
Alignment:
Q  454 ccacaatcaattattttcaaatgaagcaactttggac 490  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  35082880 ccacagtcaattattttcaaatgacgcaactttggac 35082916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 9664488 - 9664434
Alignment:
Q  216 ttttgagtgactcgcctgtgaagtgcttatgatcatagataaattctcaatatgt 270  Q
    ||||| ||||||| |||||||||||  ||||||||||||||||||||||||||||    
T  9664488 ttttgggtgactcacctgtgaagtgagtatgatcatagataaattctcaatatgt 9664434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 498
Target Start/End: Complemental strand, 9664253 - 9664209
Alignment:
Q  454 ccacaatcaattattttcaaatgaagcaactttggactgataata 498  Q
    ||||| |||||||||||||||||| |||||||||||||| |||||    
T  9664253 ccacagtcaattattttcaaatgacgcaactttggactggtaata 9664209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 193
Target Start/End: Original strand, 1151948 - 1152061
Alignment:
Q  84 gcatacaaggttcttgagaaattcaagtac----actgttcaaaaataaaatatccgactttcaaatgtccataacaaaattactttaaagcaacataat 179  Q
    ||||| ||||||||| |||||||||||||     ||| |||||||||||||||||  |||||||||||||    || |||||| ||||||||||||  ||    
T  1151948 gcatagaaggttctttagaaattcaagtaacagtactattcaaaaataaaatatcaaactttcaaatgtctccgaccaaattaatttaaagcaacaacat 1152047  T
Q  180 caacatttgagatg 193  Q
    ||||||||| ||||    
T  1152048 caacatttgtgatg 1152061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 329
Target Start/End: Original strand, 12408966 - 12409049
Alignment:
Q  246 gatcatagataaattctcaatatgtcgtaaagttgcaactggaccaaagggagatggatttttctctcttttagctgcattcca 329  Q
    ||||| || |||||||||||| ||   ||||||||||| |||||||||| || |||||||||| ||||| ||||||||| ||||    
T  12408966 gatcaaagctaaattctcaatctgatttaaagttgcaattggaccaaagagatatggatttttgtctctcttagctgcactcca 12409049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 246 - 329
Target Start/End: Original strand, 12421026 - 12421109
Alignment:
Q  246 gatcatagataaattctcaatatgtcgtaaagttgcaactggaccaaagggagatggatttttctctcttttagctgcattcca 329  Q
    ||||| || |||||||||||| ||   ||||||||||| |||||||||| || |||||||||| ||||| ||||||||| ||||    
T  12421026 gatcaaagctaaattctcaatctgatttaaagttgcaattggaccaaagagatatggatttttgtctctcttagctgcactcca 12421109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 293
Target Start/End: Complemental strand, 25575315 - 25575240
Alignment:
Q  218 ttgagtgactcgcctgtgaagtgcttatgatcatagataaattctcaatatgtcgtaaagttgcaactggaccaaa 293  Q
    ||||| ||||| | ||| ||||||  |||||||||| |||||||||||||||| ||||| |||||| |||| ||||    
T  25575315 ttgagcgactcacttgtaaagtgccgatgatcatagctaaattctcaatatgtggtaaacttgcaattggatcaaa 25575240  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 293
Target Start/End: Complemental strand, 26103694 - 26103619
Alignment:
Q  218 ttgagtgactcgcctgtgaagtgcttatgatcatagataaattctcaatatgtcgtaaagttgcaactggaccaaa 293  Q
    ||||| ||||| | ||| ||||||  |||||||||| |||||||||||||||| ||||| |||||| |||| ||||    
T  26103694 ttgagcgactcacttgtaaagtgccgatgatcatagctaaattctcaatatgtggtaaacttgcaattggatcaaa 26103619  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 417
Target Start/End: Original strand, 4163599 - 4163628
Alignment:
Q  388 ctatattcaaaggatgagagattcaatgca 417  Q
    ||||||||||||||||||||||||||||||    
T  4163599 ctatattcaaaggatgagagattcaatgca 4163628  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 417
Target Start/End: Original strand, 4225220 - 4225249
Alignment:
Q  388 ctatattcaaaggatgagagattcaatgca 417  Q
    ||||||||||||||||||||||||||||||    
T  4225220 ctatattcaaaggatgagagattcaatgca 4225249  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 29753099 - 29752951
Alignment:
Q  8 aaaaaccacaaaatcattcaagaacgaaattaaaaaagata--gataatctgattta-aaaacatgcaagccc---atgttggcatacaaggttcttgag 101  Q
    ||||||||||||||||||||||||  |||  |||||| | |  |||||||||||| | ||||||||||| ||    ||| | | ||||||| ||||||||    
T  29753099 aaaaaccacaaaatcattcaagaagaaaaaaaaaaaaaaaaaagataatctgattaataaaacatgcaaaccatatatgcttgaatacaagtttcttgag 29753000  T
Q  102 aaattcaagtacactgt-tcaaaaataaaatatccgactttcaaatgtc 149  Q
    | ||||||| ||||| | |||||||||||||||   |||||||||||||    
T  29752999 acattcaagcacactttgtcaaaaataaaatatgaaactttcaaatgtc 29752951  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 294
Target Start/End: Original strand, 2222885 - 2222954
Alignment:
Q  225 actcgcctgtgaagtgcttatgatcatagataaattctcaatatgtcgtaaagttgcaactggaccaaag 294  Q
    |||| ||||||||  ||| ||| |||||| |||||||||||||||| ||||| |||||| || |||||||    
T  2222885 actcacctgtgaatggctaatggtcatagctaaattctcaatatgttgtaaacttgcaattgaaccaaag 2222954  T

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